PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G145900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 42734.9 Da PI: 4.6778 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.5 | 7.2e-29 | 57 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d el+ ++L+ k + + ++++ i+e+ +i++++P++Lp +k + ++++fF++ +++y g+rk+r+ Sevir.7G145900.1.p 57 LPAGVKFDPSDLELL-QHLQGKSNLPNstshalIDEFIPtIEEMeGICYTHPKNLP-DIKMDGSSLHFFHRVSNAYGCGHRKRRKisgddd 145 799************.889988776664555554443444999988**********.6777889********************8677777 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 ++ +W++tg ++++++++g ++g kk+Lv+y+g+++ g+ + +Wvmh+y+l Sevir.7G145900.1.p 146 svfDERIRWHKTGASRAIYDENGVKKGWKKILVLYRGSRRGGSkidRDNWVMHQYHL 202 77655788***************************99888777334689******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-33 | 42 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.843 | 57 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-11 | 58 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MASSWVMTGV GLIKKIRNAT QLISLRLGEL VAEPYIKCPN CKCGIDTSDV SLVWPALPAG 60 VKFDPSDLEL LQHLQGKSNL PNSTSHALID EFIPTIEEME GICYTHPKNL PDIKMDGSSL 120 HFFHRVSNAY GCGHRKRRKI SGDDDSVFDE RIRWHKTGAS RAIYDENGVK KGWKKILVLY 180 RGSRRGGSKI DRDNWVMHQY HLGADEDEPD GELVISKVFY QLPSKKNDKS EMGDVELESE 240 PSAAKIDPRT PMIHPPQSCL PNNSPCDTDQ YTPNQVDQQE ECSTSVCPVK VEAAECSAWS 300 AELSPAVVVA NLPAWDEPGQ PRDTTDPDPE PEAPIPVDGS NTDPFHGLPE LDTTFPCLGT 360 PSDCISLADI QLGSQDSFRG WLDSFY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G145900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012703093.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368RVE7 | 0.0 | A0A368RVE7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb01338.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 4e-68 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G145900.1.p |