PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G118500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 172aa    MW: 18025 Da    PI: 7.6495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G118500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C +C++ F+++  L  H++ H
  Sevir.7G118500.1.p 49 FACCYCPRKFRSSQALGGHQNAH 71
                        78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0344976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDRGMERVFG SCIPGMEAVA PADREEEGLE LSLSLHPSPS SPPRFQAVFA CCYCPRKFRS  60
SQALGGHQNA HKLQRNLARR GREAASAPPA PVPPPPAAAD DQGNHRAASG SESAPAPRTR  120
AEPGADAWGE GVRHRRQHHL HHVPAGGGVE ASSGARGDGD AAEIIDLSLR L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G118500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704072e-89EU970407.1 Zea mays clone 344595 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975723.11e-118transcriptional regulator SUPERMAN
TrEMBLA0A368RUG11e-117A0A368RUG1_SETIT; Uncharacterized protein
STRINGSi012000m9e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.15e-14zinc finger protein 2