PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G117300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 205aa    MW: 22231.1 Da    PI: 5.8731
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G117300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-173079255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Sevir.7G117300.1.p 30 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 79
                        69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5123087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-313087IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-213087IPR016177DNA-binding domain
SMARTSM003805.9E-353093IPR001471AP2/ERF domain
PfamPF008474.1E-113179IPR001471AP2/ERF domain
CDDcd000184.66E-313187No hitNo description
PRINTSPR003677.1E-103142IPR001471AP2/ERF domain
PRINTSPR003677.1E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDQMGKHLQV PSPMTSSSSS SSSSQQQQQQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF  60
ESAEMAAVAH DVAALRLRGR DAQLNFPGCV GWLPRPASTH PGDVRAAAAE AADRVRCDPA  120
LLVLHQAAAA RCHHELELEL GPPGPVVVEL GSDEEFELDL DSPRLWAEMA EAMLLDPPGW  180
ATGVGNAEVA QQCCWSHGSL WDAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-172787263ATERF1
3gcc_A6e-172787263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G117300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581601e-161EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975709.11e-145ethylene-responsive transcription factor ERF027-like
TrEMBLA0A368RUJ11e-144A0A368RUJ1_SETIT; Uncharacterized protein
STRINGLPERR04G10650.15e-66(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-26ERF family protein