PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.7G117300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22231.1 Da PI: 5.8731 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Sevir.7G117300.1.p 30 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 79 69****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.512 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.9E-35 | 30 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 31 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.66E-31 | 31 | 87 | No hit | No description |
PRINTS | PR00367 | 7.1E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MDQMGKHLQV PSPMTSSSSS SSSSQQQQQQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF 60 ESAEMAAVAH DVAALRLRGR DAQLNFPGCV GWLPRPASTH PGDVRAAAAE AADRVRCDPA 120 LLVLHQAAAA RCHHELELEL GPPGPVVVEL GSDEEFELDL DSPRLWAEMA EAMLLDPPGW 180 ATGVGNAEVA QQCCWSHGSL WDAC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-17 | 27 | 87 | 2 | 63 | ATERF1 |
3gcc_A | 6e-17 | 27 | 87 | 2 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.7G117300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU958160 | 1e-161 | EU958160.1 Zea mays clone 1675695 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975709.1 | 1e-145 | ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A368RUJ1 | 1e-144 | A0A368RUJ1_SETIT; Uncharacterized protein | ||||
STRING | LPERR04G10650.1 | 5e-66 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71450.1 | 5e-26 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.7G117300.1.p |