PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G115700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 664aa    MW: 73362.8 Da    PI: 5.6684
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24128228198
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+  
  Sevir.7G115700.1.p 128 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPKRHLLTTGWSVFVSSKRLVAGDAFIFM-- 215
                         99*****************************7556666.59************************************************.. PP

                         SSSEE..EEEEE- CS
                  B3  86 grsefelvvkvfr 98 
                         + +++el+v+v+r
  Sevir.7G115700.1.p 216 RGEDGELRVGVRR 228
                         4499*******98 PP
2Auxin_resp1003.1e-33254339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                         a+ha+st++ F+v+Y+Pr+s+s+F+v+v+k+++a k+k+svGmRfkm+fe+++++err+sGt+v++     ++ + W +S WrsLk
  Sevir.7G115700.1.p 254 ASHAISTGTLFSVFYKPRTSRSDFIVSVNKYLEAKKQKISVGMRFKMRFEGDEAPERRFSGTIVDIGSlpaMSKSLWADSDWRSLK 339
                         789*************************************************************997622267778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-44116257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41125243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-21126228No hitNo description
SMARTSM010197.6E-21128230IPR003340B3 DNA binding domain
PfamPF023623.3E-22128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674128230IPR003340B3 DNA binding domain
PfamPF065071.6E-31254339IPR010525Auxin response factor
PfamPF023091.0E-12536638IPR033389AUX/IAA domain
PROSITE profilePS5174527.257549631IPR000270PB1 domain
SuperFamilySSF542775.89E-12551628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAAAMDVANP GAAASSGMSS DALYRELWHA CAGPLVTVPR QGERVYYFPQ GHMEQLEAST  60
HQQLDQYLPM FNLPSKILCS VVNVELRAEA DSDEVYAQIM LQPEADQSEL TSPDPGLQEP  120
EKCTAHSFCK TLTASDTSTH GGFSVLRRHA EECLPQLDMS QNPPCQELVA KDLHGTEWHF  180
RHIFRGQPKR HLLTTGWSVF VSSKRLVAGD AFIFMRGEDG ELRVGVRRLM RQVNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSDFIVS VNKYLEAKKQ KISVGMRFKM  300
RFEGDEAPER RFSGTIVDIG SLPAMSKSLW ADSDWRSLKV QWDEPSSILR PDRISPWEVE  360
PLDAANPQSP QPPLRNKRAR PLASPSMVAE LPSGFGLWKP PTDSARTLSF SEPQRARELF  420
PSIPPSAFSS SSNVSFNSKN EPSMLSSQFY WSARDTRADS CAASTNTVIV EKKQEPSSGG  480
CRLFGIDICS AEEEVLPVVT APGLGYDQTA ASVELNSDKL SQLSDVNNSD AQAASSEPSP  540
LESQSRQVRS CTKVIMQGMA VGRAVDLTKL SGYSDLCHKL EEMFDIQGEL GSTLKKWRVI  600
YTDDEDDMML VGDDPWNEFC SMVKRIYICT YEEAKKLTSK SKLPGNSDTS KLSDVNSPSE  660
WVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053641357Auxin response factor 1
4ldw_A0.053641357Auxin response factor 1
4ldw_B0.053641357Auxin response factor 1
4ldx_A0.053641357Auxin response factor 1
4ldx_B0.053641357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G115700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975691.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLK3Y5R90.0K3Y5R9_SETIT; Auxin response factor
STRINGSi009558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]