PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G103800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 963aa    MW: 106453 Da    PI: 8.3474
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G103800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.8e-22171257191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+++++k      + + +rtgC+a+l v++ k  +k ev+ ++  HnH+la
  Sevir.7G103800.1.p 171 EFYRYYGWKVGFNVRKEYANRSKKTGEITSRKFACSREGHRASHTSK-----GPVPDSRTGCNAHLIVRRPKpGAKLEVYAFQPRHNHPLA 256
                         6*****************************************98777.....999****************99****************98 PP

                FAR1  91 p 91 
                         p
  Sevir.7G103800.1.p 257 P 257
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-18171257IPR004330FAR1 DNA binding domain
PfamPF105514.1E-17389466IPR018289MULE transposase domain
PROSITE profilePS5096610.571643690IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-7665692IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-5665688IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MSSSAASPPP PSDPHPAPGP NIAEPASSGS HASPSLPSPP KPNLPVTTPP PLDTSATTTT  60
AAAPSAATRG LTIAAPPSRK TSRANATGPS RNAPRGPNAT ATATATSAAP PRNSSGATAF  120
TPVVSRHPAV ATAADAATAP TTPLGAGPPT RPEEYTPRMG QEFGSEQEAY EFYRYYGWKV  180
GFNVRKEYAN RSKKTGEITS RKFACSREGH RASHTSKGPV PDSRTGCNAH LIVRRPKPGA  240
KLEVYAFQPR HNHPLAPSFV TCPFLGTAAA PDAVPPPDYP VNGGEPLGVQ NCAEGDNAVT  300
ASAGEGGQRR PLRMRRQWEM KYGEAGTLLN YFQEQSQADP GFYYAVQLDV EDKVANVFWA  360
DARMVIDYSH FGDVVAFDVV SRNSISLRHF ASFVGCNNLG EPILFALALM YDETAESFQW  420
LFETFLHAMS QQAPRTFFSH QDMVIAKAVS LVMPGTSHAI CAWNLKHAAT RILNHLGKGD  480
CSFIKEFKAC INEYEEEMEF ITSWNAMINK HNLCDNVWLQ KVFEEKEKWA KPYVKGIFSA  540
GMKGTRFNDS LHSEVRDHLR AEVDIILFLR HVQKVVNDRR HKELEIEYSS RLKLPYFKIK  600
APVLLQASEV YATMIFQLFQ EEHEEFQSAY IVNRDESGPC REYTVSVIDK EKQFKVYGNP  660
TEQTVSCSCR KFETKGFLCS HALKVLDAMD IKYLPDRYIL KRWTKYARCL TSLEAPGQTF  720
QTDKSLEFSS RYQCMCQKYV RLVTRASGCE ESYRILDKFW LELGKKVDDI LLKQTSISTS  780
MIQPDVENPM ISLSSITDGT ESENVLEKSS KARAKESKKG QKNKMQPRNC IEKGLRKKQK  840
VLSEQPSVMY SLADASARSG NATFQGLEAH PNMVPVGSQV PACKSCRGVD LSNPMEPINY  900
EGMHPGLSPA FTQELDFVTY HTSLASSNSP QDQYNKHLGT KSTNSTNLHS SLTGLIEMNI  960
WL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G103800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684126.10.0protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLQ7XMG40.0Q7XMG4_ORYSJ; OSJNBa0028I23.18 protein
STRINGOS04T0421700-010.0(Oryza sativa)
STRINGORGLA04G0094900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5