PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G101500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 523aa MW: 56349.7 Da PI: 7.0377 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.1 | 4.8e-26 | 200 | 265 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL llt+kf++l++++++gi++ln+ a++L +v ++RR YDi+NVLe+++liekk+kn+i+wkg Sevir.7G101500.2.p 200 RYDSSLALLTRKFVSLFKQVQDGILDLNSTAEKL---HV--QKRRMYDITNVLEGIGLIEKKSKNRIHWKG 265 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-27 | 198 | 267 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.6E-32 | 200 | 265 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.07E-17 | 200 | 263 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.1E-23 | 202 | 265 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 6.00E-40 | 277 | 381 | No hit | No description |
SuperFamily | SSF144074 | 7.06E-29 | 278 | 382 | No hit | No description |
Pfam | PF16421 | 4.7E-30 | 280 | 380 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MSGGARPAAS QQIVQSLQRC ALLPPVGPPF ADALGDYHRF PRPSSSPAAA AAAAAPLAGG 60 RGGIEEGIVL RAPVSRLSPV RPPFASAPGD YHRFPRPSSP AAAAAPLAGG RGGIEEGIVA 120 RTPLKRKAPY EGSGIAESLE LVMTSHGFNG GVGTPLGAPV SGKSARTYKS KAKCCKAEPQ 180 TPISNAGSPG NPPTPAVPCR YDSSLALLTR KFVSLFKQVQ DGILDLNSTA EKLHVQKRRM 240 YDITNVLEGI GLIEKKSKNR IHWKGLDESG TNLDNALSVL KNEVENLNLQ EQALDEHISE 300 MRKKLETLTE DENRQRCLFL TEDDIKGLPC FQNQTLIAIK APHGTSVEVP NPDLMAGESF 360 QRRYRIIIRS TMGPVDLYLV SNFEEKLEGK LDDIATLASH TYFAKCAASV KGPRTKRAQR 420 NRKEAVLNAQ QIHKTPDLNA PCPSEGVLRK ILPKDVDSDA DYWLLTDDDV SITDMWRTAQ 480 MEWDQIDPND FLAEEVSTPG PGTLNQQPDA NGEPTADGPN HG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-24 | 195 | 266 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G101500.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702640.1 | 0.0 | transcription factor E2FB isoform X3 | ||||
TrEMBL | A0A368RVK0 | 0.0 | A0A368RVK0_SETIT; Uncharacterized protein | ||||
STRING | Si009650m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-106 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G101500.2.p |