PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G094700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 537aa    MW: 57318.5 Da    PI: 6.9941
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G094700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.34e-18130219186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +Wt+  +  L++a++++ e+l+rg+l++ +We+v+ ++     ++   +s +qCk+k++nl+kryk + ++  + + +++s++p+f+++e
  Sevir.7G094700.1.p 130 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAGAVtdgqGKTTGGKSVEQCKNKIDNLKKRYKVECQRLASSSGGAVSHWPWFKKME 219
                         5*************************************7655444446899**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.5E-20128221No hitNo description
Gene3DG3DSA:3.40.1160.103.4E-58275487IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536333.14E-41277487IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.17E-86280487No hitNo description
PfamPF006964.7E-14280487IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHQPAA PPPQAPTTAQ QPAPPPQPAQ AFCFADAAVA PGAGAGAGSF  60
AQVPEESNHH AERGKAAHHA KRTRERADEF SSDGGEYCSY INSGGSGGGG KKGRGGGSSG  120
ASDYRKDREE WTDGAISSLL DAYTDRFEQL NRGNLRGRDW EDVAGAVTDG QGKTTGGKSV  180
EQCKNKIDNL KKRYKVECQR LASSSGGAVS HWPWFKKMEQ IVGNSASPAS SKPLATAEDE  240
KPSQQQQQQH GSKRYPLSSA GPITVVGSSR ANPLSNPRWK RVLLKIGGTA LAGPAPQNVD  300
PKIIMLIARE VQVACHHGVE VAIVVGGRNI FCGDNWVAAT GTDRASTYPI GMMASVMNSV  360
LLQASLEKIG VETRVQTALM IQEVAEPYVR RRAIRHLEKG RVVIFGGIGA GIGNPLFTTD  420
TAAALRASEI SADVVLKGIV GDEEYGCPPR SNNNAPFEHI SFREFAARGF SRMDMTAVTC  480
CEENNIPELQ DMSILWGTSC ILCLHGIFWI GEVKHVHQTE ACTLTCPGML VYYVLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-522714871214Uridylate kinase
3ek5_B3e-522714871214Uridylate kinase
3ek5_C3e-522714871214Uridylate kinase
3ek5_D3e-522714871214Uridylate kinase
3ek5_E3e-522714871214Uridylate kinase
3ek5_F3e-522714871214Uridylate kinase
3ek6_A3e-522714871214Uridylate kinase
3ek6_B3e-522714871214Uridylate kinase
3ek6_C3e-522714871214Uridylate kinase
3ek6_D3e-522714871214Uridylate kinase
3ek6_E3e-522714871214Uridylate kinase
3ek6_F3e-522714871214Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116GGKKGRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G094700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0675670.0BT067567.1 Zea mays full-length cDNA clone ZM_BFc0089D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703201.10.0uncharacterized protein LOC101785306 isoform X1
TrEMBLK3Y6E60.0K3Y6E6_SETIT; Uncharacterized protein
STRINGSi009787m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-140Trihelix family protein