PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.7G087500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 420aa MW: 44282.2 Da PI: 10.3704 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 200 | 249 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa a+++a+++++g Sevir.7G087500.1.p 200 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 249 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.2E-33 | 199 | 258 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 200 | 258 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-38 | 200 | 263 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 200 | 257 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-30 | 200 | 258 | No hit | No description |
Pfam | PF00847 | 2.1E-13 | 200 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 223 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MAAVFVVVRA PEAPKSKKAK LKLSSPPTHA RIDRSSSIGD GRRRRRQIDR QLTKVDPRRH 60 GKRPLPADKE EEDQPPPPPP AKHEQLEIEE HRYHVSQLQQ GATFSAGGGG GGSSSSSAAG 120 AAAGPSPEAY AQYYYSARAD HDASAVASAL AHVIRASPDQ LPPHAFGGGG APPGQGDYQQ 180 AAPPAAAAAE EEQAAGRRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEDAAIAY 240 DEAALRFKGT KAKLNFPERV QGRTDMGFLV TRGIPDRHHH QGGAAVTLAA MPPPHRQHHQ 300 TVVPYPDLMQ YAQLLQGGGR GGGGAGDHHA EAAAQQAQAR LMMMARGGVS LPFGAASFSS 360 SSSSAPQILD FSTQQLIRPG PPSPAAAAPS TPSSTTTASS PGGSAWPYGG EHHRNKKDA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-26 | 199 | 261 | 4 | 67 | ATERF1 |
3gcc_A | 4e-26 | 199 | 261 | 4 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 317 | 323 | GGRGGGG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.7G087500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU957062 | 1e-145 | EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702791.1 | 0.0 | AT-rich interactive domain-containing protein 1A isoform X3 | ||||
TrEMBL | K3Y7W0 | 0.0 | K3Y7W0_SETIT; Uncharacterized protein | ||||
STRING | Si010289m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4447 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-22 | related to AP2 6l |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.7G087500.1.p |