PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G072200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 655aa    MW: 73224.1 Da    PI: 8.477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G072200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07470510340
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                         +W +eE ell +a++++++g   +W+ +++ +g+gR+ +++
  Sevir.7G072200.2.p 470 PWGKEEVELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 510
                         8***********************************99876 PP
2Myb_DNA-binding21.55.3e-07597639343
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                         +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Sevir.7G072200.2.p 597 AWSETQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 639
                         7********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.57E-2079175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.6E-2193199IPR001623DnaJ domain
SMARTSM002712.2E-1696171IPR001623DnaJ domain
CDDcd062579.88E-1397168IPR001623DnaJ domain
PfamPF002264.3E-1897176IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PRINTSPR006253.0E-8102120IPR001623DnaJ domain
PRINTSPR006253.0E-8120135IPR001623DnaJ domain
PRINTSPR006253.0E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.168463518IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-5465510IPR009057Homeodomain-like
SuperFamilySSF466891.5E-7465511IPR009057Homeodomain-like
SMARTSM007174.6E-6467520IPR001005SANT/Myb domain
PfamPF002492.9E-6470510IPR001005SANT/Myb domain
CDDcd001675.79E-5470510No hitNo description
SMARTSM007174.0E-5594646IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7595639IPR009057Homeodomain-like
CDDcd001678.75E-5597639No hitNo description
PfamPF002491.2E-5597639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-4597639IPR009057Homeodomain-like
PROSITE profilePS500906.075598639IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEPQKSCLLI TYSQEIVDGV PLYVSSNCLP MKALKYEPAG HSFHAAAMKL LGLGEQEDTE  60
TDDRSVSSDD KSQDFNTASD TFSSKGKKKS SGSQQQDHYA LLGLGHLRFL ATEDQIRKSY  120
RDMALKHHPD KQAALILAET TEEAKQAKKD EIESNFKAIQ EAYEVLIDPT KRRIYDSTDE  180
FDDDVPTDCA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD ATPVQEVDKF YNFWYNFKSW  240
REFPDDDEYD LEQAESREHK RWMERQNAKL QEKAKKAEYA RVRTLVDNAY KKDPRIQRRK  300
DEEKAEKQRR KEAKYLAKKQ QEEEAARAAE EERKRKEEEA KKAAEAALNQ KKLKEKEKKL  360
LRKEKTRLRT LAAPVVAESN FGLSDEDVET ACASLDMEQL KKLCDSMEGK DAAEKAKLLS  420
SALNKESSSK EAKKSDANGV EGSAPKSNST GGKVTQGSSL LNSYEKKERP WGKEEVELLR  480
KAIQKYPKGT SRRWEVVSEF IGTGRSVEEI LKATKTVLLQ KPDSTKAFDS FLEKRKPAQT  540
IASPLSTRDE TVSSSTDGAG TASSKTAAQP ASSQPANGKA AADPVPDAAP SVTDPEAWSE  600
TQVLALVQAL KAFPKDASQR WERVAAAVPG KTVVQCKKKV AAMRENFRSK KSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919329720124Zuotin
5dje_B1e-1919329720124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332353RKRKEEEAKKAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G072200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975359.10.0dnaJ homolog subfamily C member 2
RefseqXP_004975360.10.0dnaJ homolog subfamily C member 2
TrEMBLK3Y5T70.0K3Y5T7_SETIT; Uncharacterized protein
STRINGSi009576m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-126DnaJ domain ;Myb-like DNA-binding domain