PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G061200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 140aa MW: 14561.9 Da PI: 9.5203 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.4 | 3.3e-10 | 25 | 105 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ l++p + a e+g + + + g + W+v++ k +++ +l++GW eF++a g+ +g +v+++ g ++ l k+f+ Sevir.7G061200.1.p 25 SREALRIPDELAGEIGAA-----EALVVGPAGgkvKFWSVEV--GKDGDGAFLGRGWPEFAEACGVGTGWLLVLRHRG--RGVLSAKAFD 105 566799999999888755.....46666777768899*****..9******************************755..4545666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02362 | 8.8E-8 | 25 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-10 | 26 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-9 | 28 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MASSGPGKQG TATAKKHLRV LLPFSREALR IPDELAGEIG AAEALVVGPA GGKVKFWSVE 60 VGKDGDGAFL GRGWPEFAEA CGVGTGWLLV LRHRGRGVLS AKAFDATCCF RELGAPAPPA 120 KDPPISHWSP CMSQKLIRG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G061200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 1e-74 | putative B3 domain-containing protein Os04g0347400 | ||||
Swissprot | Q7XS75 | 7e-23 | Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | K3YDR8 | 5e-83 | K3YDR8_SETIT; Uncharacterized protein | ||||
STRING | Si012375m | 8e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G061200.1.p |