PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G060300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 364aa    MW: 40612.9 Da    PI: 8.9493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G060300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-1075162497
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl p+d +++  + +p kf+e++  +++++s++ ++  + g+  +v+l  + + +  +l++GW++   ++++ +   +++k++g++ f  +
  Sevir.7G060300.1.p  75 VL-PHDFMEK--MLIPAKFVEHYiPEEHKNSRMAMVIGSLGKICRVEL--EMNESNLFLRGGWSQVLVSHDVTQANALLLKYEGNMVF--T 158
                         44.4444443..89******999*555568889***************..999999****************************9999..8 PP

                         EEEE CS
                  B3  94 vkvf 97 
                         v+vf
  Sevir.7G060300.1.p 159 VRVF 162
                         8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1367165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1468166IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.62869165IPR003340B3 DNA binding domain
CDDcd100174.07E-970162No hitNo description
SMARTSM010194.0E-672165IPR003340B3 DNA binding domain
PROSITE profilePS508638.896288355IPR003340B3 DNA binding domain
CDDcd100174.45E-7312339No hitNo description
Gene3DG3DSA:2.40.330.102.8E-9312354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-9312353IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRIPDELAEG IGAGEARVVG PSGGKVKVWR VEVGRDGDDA FLGRGWPEIA AAFGAGTEAT  60
TSSKDVSHRP QFVSVLPHDF MEKMLIPAKF VEHYIPEEHK NSRMAMVIGS LGKICRVELE  120
MNESNLFLRG GWSQVLVSHD VTQANALLLK YEGNMVFTVR VFGPDGFQRE SKDKDIRIQQ  180
VEQKINPSMQ QEAPSESIRN CKSKKDWPSR EGQKKPKGST VSMNEASKRI AVYEIGPPSW  240
IKKEINTCTL RKKLVSTTIS LINKIKSYAP QDAGVDDIRC SVDFFSCVCI HDLLSNPKKL  300
SLHLAVGGFP CKNNSFVIVR GWMMFCRENS LKEGDICTFN IIETTLWHVI ITHNKVKMNK  360
FAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G060300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684231.11e-142putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PYC61e-150A0A3L6PYC6_PANMI; 40S ribosomal protein S27
STRINGPavir.Gb02309.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.18e-09B3 family protein