PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G044000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 340aa    MW: 37730.4 Da    PI: 4.9847
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G044000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.91.1e-2557122171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Sevir.7G044000.2.p  57 RYDNSLSLLTKKFINLLQGAENGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 122
                         689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-2755123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-1657120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-3257122IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-2359122IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146607.19E-33134246No hitNo description
SuperFamilySSF1440742.62E-23134245No hitNo description
PfamPF164219.7E-24138243IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGETTQGHDK DTTSEPAKVI KRVKKLKVSK HSTGTADGSG AVEGDSGPSL HSIYHCRYDN  60
SLSLLTKKFI NLLQGAENGT LDLNKAAETL EVQKRRIYDI TNVLEGVDLI EKGLKNMIRW  120
KGFDMSKPKE IECQISSLKE ELESLYDEEF RLDDEIREAR DKLQALTLDE DKRKFLYLSK  180
EDINKIPHFQ GSTLIAVNGP HGTCVEVLDP NADLYLYGNL GLQEKHYKIV LRSSMGPIDC  240
YLISDHQEIL NPDQQVASDK LEPVVAAGSS QAVQEMDCDP NQTPEKGHSN AVCTHASELS  300
RKHEIMSGIL RIVPSHSDAN SDYWLASDVD ASMTDAWGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2056123674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G044000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647370.0BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankKJ7268780.0KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.10.0transcription factor E2FC
TrEMBLA0A368RQY50.0A0A368RQY5_SETIT; Uncharacterized protein
STRINGGRMZM2G050590_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.29e-82E2F transcription factor 1