PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G032500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 860aa    MW: 93311.6 Da    PI: 4.9835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G032500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-085381125
                        --S---SGGGGTS....--TTTTT-SS-S CS
             zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                        +kt+lC++f+r G     C++G++C++aH
  Sevir.7G032500.1.p 53 WKTSLCSYFRRRGagaeGCSHGESCRYAH 81
                        8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-124989IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-65088IPR000571Zinc finger, CCCH-type
SMARTSM003560.00145283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4695284IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-65381IPR000571Zinc finger, CCCH-type
CDDcd005907.32E-6129194No hitNo description
Gene3DG3DSA:3.30.70.3303.5E-6131204IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.08E-6132201IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168741.82247859IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.27E-47249275IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.27E-47307434IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.27E-47482598IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.7E-61496598IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.3E-8538599IPR025714Methyltransferase domain
CDDcd024401.60E-6544598No hitNo description
Gene3DG3DSA:3.40.50.1501.7E-61741799IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.27E-47747859IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.4E-6750795IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300755787IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.7E-61834859IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MEDDKTPPQP QPEVVGEKRK REEGSPDAAT EDAPPASAAF GEDAASSGRH PMWKTSLCSY  60
FRRRGAGAEG CSHGESCRYA HTEEELRPRP DGTWDPTSDR AKKLRKVAAE AQEETEEEVT  120
VDEQSLDKCL VGLPRGWTAD RLKGFLQDQG ISYATAKKKK GMTVGFVTFE SVEQLTNAVQ  180
VLKENPSGGK EIKIADANRR SHQKVHAEGP ASDNGTATEN GSNAAATAGE ASAAEAVASN  240
KKSARDAVTP LAHMSYNDQL EHKKHSMAQI LKRLTRNARK ACPPAIPLPN WIFKSKEIGG  300
LPCKLEGILE SPIVDGYRNK CEFSVGYSLE GKKTVGFMLG NFREGVTAVE EPVNCPNVSE  360
ISCKYAQIFQ DFLQSSSLPL WSRVDNCGFW RQLTVREGRY PAEAVVLQNA ESKISEVMLI  420
VQVCSTDVDE ALMKEEFDKL SAALIEGAAM CSPSLPLTTI VVQDHKGISN AAPADCPLIP  480
LLVPKGDQLG GGAEDKTRIH DHISNLKFSI SPTAFFQVNT LAAERLYSLA GDWANLNSDT  540
LLFDVCCGTG TIGLTLAHRV GMVVGIEMNE SAVSDAHRNA LINDIKNCRF VCGKAEDVIG  600
SLLTEYLGSP QQHIAASESN SIINDTRENE DTVDCLESNG ENMDSSTETN NNGESEQPGD  660
MSVDLPTCAG DEEIKEDSMD RVNKEVDSSH NEHNEAAGEQ KCGEASLIND ECTDTTLSDS  720
LEPGSGKTCQ DSSIPNKNVL DSSACKFKNV VAIVDPPRVG LHPTVIKALR THPLIRRLVY  780
ISCNPDSLVA NAIELCTPTS EKQEKNKGNR GWRSMSAAGL ARQRTKSMPN SEPFIPKRAM  840
AVDLFPHTSH CEMVMLFER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5xj2_A5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5xj2_B5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5xj2_C5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5xj2_D5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5zq0_A5e-1829360595372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5zq8_A5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5zq8_B5e-1829360594371Uncharacterized RNA methyltransferase SP_1029
5zth_A5e-1829360595372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G032500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269830.0KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974975.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A368RSF40.0A0A368RSF4_SETIT; Uncharacterized protein
STRINGSi009361m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]