PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 802aa    MW: 93476.9 Da    PI: 6.8694
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.11.1e-16202281289
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         f + Y++ +GF v k +++k+      +k tfvC+k+ k++e++++ +++rr+ a+++t+C+ k++vk+   ++wevt   +eHnH+l
  Sevir.7G020900.1.p 202 FISVYGQVTGFAVIKGTNYKH------KKITFVCNKSRKAKETDTR-QRKRRRDAVEHTQCRMKMTVKLV-ADRWEVTAAMNEHNHPL 281
                         6678***************99......5678***********9999.99*********************.9**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-14202281IPR004330FAR1 DNA binding domain
PfamPF105511.5E-26406498IPR018289MULE transposase domain
PROSITE profilePS509669.582683721IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4696723IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MEERCAKSSP LLPAQTMTER NLKYYQEMSG TNGESGMHQG NESANRESYS LVVSARNKVR  60
EPRKEAEKES EMAMNTRKGD TDLEERYGIM LAPEHEAGEH VNLTTEDSLQ SPIFLWNDTE  120
TNRRSEIQAL ETGDTFVQEL DQENGNAILN GDEDLNECQK DQAEAEADGD EDYMFPSPEE  180
MEKARPPEVG MVFPTLQDAH RFISVYGQVT GFAVIKGTNY KHKKITFVCN KSRKAKETDT  240
RQRKRRRDAV EHTQCRMKMT VKLVADRWEV TAAMNEHNHP LWCSPLLTRF FMSHKDMSEE  300
ERHFSRILQE SRIKPTKIME IFRKLQGRLK NIPARKVDSN NLKQSDRLMK TRNTDIGSTL  360
EHVRRLQKEQ PGFYYAMKTD EDSTIRSIFW TDARARLDYA LYGDFIHFNT TCRTNAYHMP  420
FASLIGINGH GKPTVFGWAL LENDEAETFS WLFRTFLDVM DGKKPSIIMT HQDSAIQKSI  480
AEVFPTVFHR FSMWHVMREA AAEFGGFMVN RPGMEADLTR LVTNSLTTEE FENDWKTMLE  540
KYAAELNAHL KHMYWTRSMW VPVYFKHVFC PFIRSSGSCE NTNSIFKDYV LQEDTIETFI  600
RQYNIFQESV STDRFESTRQ KPKYCTRQPI ERHAAEIYTM GLFLKFQKEL LDASAFNVFK  660
KERDRIYMVK RMLDYEDSEF LHYTFSVEVD MKNKTFNCIC LKFERDGILC CHVLRLFTQF  720
GINEIPEHYI KQRWTKKFRE QELQKLCTEK TGSTASQNAR YAVLMNRTAE IGATVSKDPK  780
QSQVFLEELE RIQQKLSSGA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975158.10.0protein FAR1-RELATED SEQUENCE 9 isoform X2
TrEMBLA0A368RTF50.0A0A368RTF5_SETIT; Uncharacterized protein
STRINGPavir.J06737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-85FAR1-related sequence 5