PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.7.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 687aa    MW: 79550.9 Da    PI: 6.196
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.77.9e-18121201290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.7.p 121 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 201
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-15121201IPR004330FAR1 DNA binding domain
PfamPF105515.0E-24325420IPR018289MULE transposase domain
PROSITE profilePS509669.569611647IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017622649IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVREAQ RTAEKESDVA MVAEEDPEQD  60
GGDHVSNDEE NDDFKGCQKD RTEAEVDGDE DYFFPSVEDV EKARPPEVGM VFPTLQDAHR  120
FLNVYGLLTG FVVKKGCNYK HKKITFVCNK SSKMKVTETG QKKRRSNAIE KTGCRMKVLV  180
KLVEGRWEIK TVVNEHNHPL MSSPSLSTFF ISHKYMSEEE RIFSRILQES KIKPSQIMEI  240
FKKLRSRLKH IPVRKMDANS LKQSDSQMEI RNTDIEITLE HVRRFQMEQP GFFYAIKTDD  300
RNTVRSIFWT DARARLDYAL YGDFISFDTS YTTREHNMLF APLIGINGHG KAIVFGWGLL  360
ENEMADKADT FSWLLRTFLD VMDGKKPTTI ITDQGSAMTK SIAEVFPTVF HRFSMWHVMR  420
KAREIFEDFM ENGPVMEADL TCLIANCLTI EEFEDGWKTM LEKYDAPPNE DLNLMYQTRL  480
MWVPVYFKHA FCPFIRSTGR SESTDTIFKE HGLRKDAIEN FFCQYDIFQK NVISPEDGYG  540
LESTQKKTMY CTRQPIERHA AEVYTMGMFL KFQKELLDAS AFNVFEIESG RVYAVKKTLD  600
YEEAEFPGDS FSVEVDLGNN MFNCICSKFE RDGMLCCHVL RLLTQFGVNV IPENYIRQRW  660
TKKFREELQK LHGTEKTRST VSQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684350.10.0protein FAR1-RELATED SEQUENCE 5 isoform X6
TrEMBLA0A368RRL30.0A0A368RRL3_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5