PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.6.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 717aa    MW: 82678.4 Da    PI: 5.9
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.4e-18151231290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.6.p 151 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 231
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-15151231IPR004330FAR1 DNA binding domain
PfamPF105515.3E-24355450IPR018289MULE transposase domain
PROSITE profilePS509669.569641677IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017652679IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVQVRE AQRTAEKESD VAMVAEELPV  60
FQLNCTEGNT LSEIQGPEAA VTSAQDPEQD GGDHVSNDEE NDDFKGCQKD RTEAEVDGDE  120
DYFFPSVEDV EKARPPEVGM VFPTLQDAHR FLNVYGLLTG FVVKKGCNYK HKKITFVCNK  180
SSKMKVTETG QKKRRSNAIE KTGCRMKVLV KLVEGRWEIK TVVNEHNHPL MSSPSLSTFF  240
ISHKYMSEEE RIFSRILQES KIKPSQIMEI FKKLRSRLKH IPVRKMDANS LKQSDSQMEI  300
RNTDIEITLE HVRRFQMEQP GFFYAIKTDD RNTVRSIFWT DARARLDYAL YGDFISFDTS  360
YTTREHNMLF APLIGINGHG KAIVFGWGLL ENEMADKADT FSWLLRTFLD VMDGKKPTTI  420
ITDQGSAMTK SIAEVFPTVF HRFSMWHVMR KAREIFEDFM ENGPVMEADL TCLIANCLTI  480
EEFEDGWKTM LEKYDAPPNE DLNLMYQTRL MWVPVYFKHA FCPFIRSTGR SESTDTIFKE  540
HGLRKDAIEN FFCQYDIFQK NVISPEDGYG LESTQKKTMY CTRQPIERHA AEVYTMGMFL  600
KFQKELLDAS AFNVFEIESG RVYAVKKTLD YEEAEFPGDS FSVEVDLGNN MFNCICSKFE  660
RDGMLCCHVL RLLTQFGVNV IPENYIRQRW TKKFREELQK LHGTEKTRST VSQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684347.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A368RRS70.0A0A368RRS7_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5