PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 697aa    MW: 80462.9 Da    PI: 6.1
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.78.1e-18131211290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.4.p 131 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 211
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-15131211IPR004330FAR1 DNA binding domain
PfamPF105515.1E-24335430IPR018289MULE transposase domain
PROSITE profilePS509669.569621657IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017632659IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVREAQ RTAEKESDVA MVAEEGPEAA  60
VTSAQDPEQD GGDHVSNDEE NDDFKGCQKD RTEAEVDGDE DYFFPSVEDV EKARPPEVGM  120
VFPTLQDAHR FLNVYGLLTG FVVKKGCNYK HKKITFVCNK SSKMKVTETG QKKRRSNAIE  180
KTGCRMKVLV KLVEGRWEIK TVVNEHNHPL MSSPSLSTFF ISHKYMSEEE RIFSRILQES  240
KIKPSQIMEI FKKLRSRLKH IPVRKMDANS LKQSDSQMEI RNTDIEITLE HVRRFQMEQP  300
GFFYAIKTDD RNTVRSIFWT DARARLDYAL YGDFISFDTS YTTREHNMLF APLIGINGHG  360
KAIVFGWGLL ENEMADKADT FSWLLRTFLD VMDGKKPTTI ITDQGSAMTK SIAEVFPTVF  420
HRFSMWHVMR KAREIFEDFM ENGPVMEADL TCLIANCLTI EEFEDGWKTM LEKYDAPPNE  480
DLNLMYQTRL MWVPVYFKHA FCPFIRSTGR SESTDTIFKE HGLRKDAIEN FFCQYDIFQK  540
NVISPEDGYG LESTQKKTMY CTRQPIERHA AEVYTMGMFL KFQKELLDAS AFNVFEIESG  600
RVYAVKKTLD YEEAEFPGDS FSVEVDLGNN MFNCICSKFE RDGMLCCHVL RLLTQFGVNV  660
IPENYIRQRW TKKFREELQK LHGTEKTRST VSQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684350.10.0protein FAR1-RELATED SEQUENCE 5 isoform X6
TrEMBLA0A368RRL30.0A0A368RRL3_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5