PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 716aa    MW: 82579.2 Da    PI: 5.9
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.4e-18150230290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.3.p 150 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 230
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-15150230IPR004330FAR1 DNA binding domain
PfamPF105515.3E-24354449IPR018289MULE transposase domain
PROSITE profilePS509669.569640676IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017651678IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVREAQ RTAEKESDVA MVAEEQLPVF  60
QLNCTEGNTL SEIQGPEAAV TSAQDPEQDG GDHVSNDEEN DDFKGCQKDR TEAEVDGDED  120
YFFPSVEDVE KARPPEVGMV FPTLQDAHRF LNVYGLLTGF VVKKGCNYKH KKITFVCNKS  180
SKMKVTETGQ KKRRSNAIEK TGCRMKVLVK LVEGRWEIKT VVNEHNHPLM SSPSLSTFFI  240
SHKYMSEEER IFSRILQESK IKPSQIMEIF KKLRSRLKHI PVRKMDANSL KQSDSQMEIR  300
NTDIEITLEH VRRFQMEQPG FFYAIKTDDR NTVRSIFWTD ARARLDYALY GDFISFDTSY  360
TTREHNMLFA PLIGINGHGK AIVFGWGLLE NEMADKADTF SWLLRTFLDV MDGKKPTTII  420
TDQGSAMTKS IAEVFPTVFH RFSMWHVMRK AREIFEDFME NGPVMEADLT CLIANCLTIE  480
EFEDGWKTML EKYDAPPNED LNLMYQTRLM WVPVYFKHAF CPFIRSTGRS ESTDTIFKEH  540
GLRKDAIENF FCQYDIFQKN VISPEDGYGL ESTQKKTMYC TRQPIERHAA EVYTMGMFLK  600
FQKELLDASA FNVFEIESGR VYAVKKTLDY EEAEFPGDSF SVEVDLGNNM FNCICSKFER  660
DGMLCCHVLR LLTQFGVNVI PENYIRQRWT KKFREELQKL HGTEKTRSTV SQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684348.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A368RRH20.0A0A368RRH2_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5