PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 699aa    MW: 80690.1 Da    PI: 6.1
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.78.1e-18133213290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Sevir.7G020700.2.p 133 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 213
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-15133213IPR004330FAR1 DNA binding domain
PfamPF105515.1E-24337432IPR018289MULE transposase domain
PROSITE profilePS509669.569623659IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017634661IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVQVRE AQRTAEKESD VAMVAEEGPE  60
AAVTSAQDPE QDGGDHVSND EENDDFKGCQ KDRTEAEVDG DEDYFFPSVE DVEKARPPEV  120
GMVFPTLQDA HRFLNVYGLL TGFVVKKGCN YKHKKITFVC NKSSKMKVTE TGQKKRRSNA  180
IEKTGCRMKV LVKLVEGRWE IKTVVNEHNH PLMSSPSLST FFISHKYMSE EERIFSRILQ  240
ESKIKPSQIM EIFKKLRSRL KHIPVRKMDA NSLKQSDSQM EIRNTDIEIT LEHVRRFQME  300
QPGFFYAIKT DDRNTVRSIF WTDARARLDY ALYGDFISFD TSYTTREHNM LFAPLIGING  360
HGKAIVFGWG LLENEMADKA DTFSWLLRTF LDVMDGKKPT TIITDQGSAM TKSIAEVFPT  420
VFHRFSMWHV MRKAREIFED FMENGPVMEA DLTCLIANCL TIEEFEDGWK TMLEKYDAPP  480
NEDLNLMYQT RLMWVPVYFK HAFCPFIRST GRSESTDTIF KEHGLRKDAI ENFFCQYDIF  540
QKNVISPEDG YGLESTQKKT MYCTRQPIER HAAEVYTMGM FLKFQKELLD ASAFNVFEIE  600
SGRVYAVKKT LDYEEAEFPG DSFSVEVDLG NNMFNCICSK FERDGMLCCH VLRLLTQFGV  660
NVIPENYIRQ RWTKKFREEL QKLHGTEKTR STVSQNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975156.10.0protein FAR1-RELATED SEQUENCE 5 isoform X5
TrEMBLA0A368RRF00.0A0A368RRF0_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5