PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G020700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 718aa MW: 82806.5 Da PI: 5.9 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.6 | 8.4e-18 | 152 | 232 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n Y+ +GF v+k ++k+ +k tfvC+k+ k + +++ +k+rr++a ++tgC+ k+ vk+ +g+we++++++eHnH+l+ Sevir.7G020700.1.p 152 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 232 8899***************99......5678***********9999.9**********************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-15 | 152 | 232 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.4E-24 | 356 | 451 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.569 | 642 | 678 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0017 | 653 | 680 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTDQVQVRE AQRTAEKESD VAMVAEEQLP 60 VFQLNCTEGN TLSEIQGPEA AVTSAQDPEQ DGGDHVSNDE ENDDFKGCQK DRTEAEVDGD 120 EDYFFPSVED VEKARPPEVG MVFPTLQDAH RFLNVYGLLT GFVVKKGCNY KHKKITFVCN 180 KSSKMKVTET GQKKRRSNAI EKTGCRMKVL VKLVEGRWEI KTVVNEHNHP LMSSPSLSTF 240 FISHKYMSEE ERIFSRILQE SKIKPSQIME IFKKLRSRLK HIPVRKMDAN SLKQSDSQME 300 IRNTDIEITL EHVRRFQMEQ PGFFYAIKTD DRNTVRSIFW TDARARLDYA LYGDFISFDT 360 SYTTREHNML FAPLIGINGH GKAIVFGWGL LENEMADKAD TFSWLLRTFL DVMDGKKPTT 420 IITDQGSAMT KSIAEVFPTV FHRFSMWHVM RKAREIFEDF MENGPVMEAD LTCLIANCLT 480 IEEFEDGWKT MLEKYDAPPN EDLNLMYQTR LMWVPVYFKH AFCPFIRSTG RSESTDTIFK 540 EHGLRKDAIE NFFCQYDIFQ KNVISPEDGY GLESTQKKTM YCTRQPIERH AAEVYTMGMF 600 LKFQKELLDA SAFNVFEIES GRVYAVKKTL DYEEAEFPGD SFSVEVDLGN NMFNCICSKF 660 ERDGMLCCHV LRLLTQFGVN VIPENYIRQR WTKKFREELQ KLHGTEKTRS TVSQNAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G020700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975153.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_022684346.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A368RRS7 | 0.0 | A0A368RRS7_SETIT; Uncharacterized protein | ||||
STRING | Si009620m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-79 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G020700.1.p |