PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020600.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 709aa    MW: 82458.4 Da    PI: 5.6577
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.4e-17105185290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y++ +GF v k +++k+       k t++C+k+ k++e++ + +++r++++ +rtgC  +++vk+  +g+we++ +++eHnH+l+
  Sevir.7G020600.5.p 105 FVNVYGQVTGFVVYKGRNYKH------RKITLQCNKSKKAKENEMR-QRKRKRNTIERTGCPMRVTVKLV-EGRWEIMAVQNEHNHPLS 185
                         7799***************99......5678***********9999.99*********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-15105185IPR004330FAR1 DNA binding domain
PfamPF105511.9E-23309401IPR018289MULE transposase domain
PROSITE profilePS509669.458592628IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054603630IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MESYMAVIAE KVPPFLLNGA GPGMLSEIQT ADADEAFIQE LEQENGNPIL NDEPDDDLNE  60
CQEDTAEVEV DCDEDYFFPS PDEVEQARPP EVGMVFATLD DAQRFVNVYG QVTGFVVYKG  120
RNYKHRKITL QCNKSKKAKE NEMRQRKRKR NTIERTGCPM RVTVKLVEGR WEIMAVQNEH  180
NHPLSSSPSL TRFFLSHKYM SEEEKNFSRI LQESKIKPAK IMEVFWRLRR KFKNIPVQKM  240
AVNNLEQSDR LMKIENTDIE STLEHVRRLQ KEQPGFYYAI KTDGDNTVRS IFWTDAQARL  300
DYALYGDFIS FDTSYSTIEY NMLFALLIGM NGHGKATVFG WALLEDERAE TFSWLFRTFL  360
DVMDGKKPST ILTHQDSAIT KSIAEVFHTA FHRFDMWHVL RKARDELGSF MAHRGGMETE  420
LTHLVSNSVA TEEFENGWQA MLEKYDAASN AHLDLMYQTR LMWVPVYFKH VFSPFTQSTG  480
CSKSKHSIFK DYVQQNDTIE TFISQYDIFQ EEAVSIEDGD RSQSTLKKPV YSTRHPIERH  540
AAEIYTTGMF LRFQKELLDA SAFNAFEKER DVIYTVKKAL DYEDAEFLRD SFSVDVDLKT  600
NTFNCICSKF ERDGIVCCHV LRLFTQFSIN MIPEHYIKPR WTKKFREQEL QKYCSEKIGS  660
DISQSSLRYA MIMNRMAESC AAVSKDPNQS KIFLEEHERI LWKLTDRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684165.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Y5L30.0K3Y5L3_SETIT; Uncharacterized protein
STRINGSi009501m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-83FAR1-related sequence 5