PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 710aa    MW: 82586.5 Da    PI: 5.6577
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.4e-17106186290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y++ +GF v k +++k+       k t++C+k+ k++e++ + +++r++++ +rtgC  +++vk+  +g+we++ +++eHnH+l+
  Sevir.7G020600.2.p 106 FVNVYGQVTGFVVYKGRNYKH------RKITLQCNKSKKAKENEMR-QRKRKRNTIERTGCPMRVTVKLV-EGRWEIMAVQNEHNHPLS 186
                         7799***************99......5678***********9999.99*********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-15106186IPR004330FAR1 DNA binding domain
PfamPF105511.9E-23310402IPR018289MULE transposase domain
PROSITE profilePS509669.458593629IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054604631IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MESYMAVIAE KQVPPFLLNG AGPGMLSEIQ TADADEAFIQ ELEQENGNPI LNDEPDDDLN  60
ECQEDTAEVE VDCDEDYFFP SPDEVEQARP PEVGMVFATL DDAQRFVNVY GQVTGFVVYK  120
GRNYKHRKIT LQCNKSKKAK ENEMRQRKRK RNTIERTGCP MRVTVKLVEG RWEIMAVQNE  180
HNHPLSSSPS LTRFFLSHKY MSEEEKNFSR ILQESKIKPA KIMEVFWRLR RKFKNIPVQK  240
MAVNNLEQSD RLMKIENTDI ESTLEHVRRL QKEQPGFYYA IKTDGDNTVR SIFWTDAQAR  300
LDYALYGDFI SFDTSYSTIE YNMLFALLIG MNGHGKATVF GWALLEDERA ETFSWLFRTF  360
LDVMDGKKPS TILTHQDSAI TKSIAEVFHT AFHRFDMWHV LRKARDELGS FMAHRGGMET  420
ELTHLVSNSV ATEEFENGWQ AMLEKYDAAS NAHLDLMYQT RLMWVPVYFK HVFSPFTQST  480
GCSKSKHSIF KDYVQQNDTI ETFISQYDIF QEEAVSIEDG DRSQSTLKKP VYSTRHPIER  540
HAAEIYTTGM FLRFQKELLD ASAFNAFEKE RDVIYTVKKA LDYEDAEFLR DSFSVDVDLK  600
TNTFNCICSK FERDGIVCCH VLRLFTQFSI NMIPEHYIKP RWTKKFREQE LQKYCSEKIG  660
SDISQSSLRY AMIMNRMAES CAAVSKDPNQ SKIFLEEHER ILWKLTDRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684165.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Y5L30.0K3Y5L3_SETIT; Uncharacterized protein
STRINGSi009501m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-83FAR1-related sequence 5