PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G020600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 746aa    MW: 86587.9 Da    PI: 5.6523
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G020600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.6e-17142222290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y++ +GF v k +++k+       k t++C+k+ k++e++ + +++r++++ +rtgC  +++vk+  +g+we++ +++eHnH+l+
  Sevir.7G020600.1.p 142 FVNVYGQVTGFVVYKGRNYKH------RKITLQCNKSKKAKENEMR-QRKRKRNTIERTGCPMRVTVKLV-EGRWEIMAVQNEHNHPLS 222
                         7799***************99......5678***********9999.99*********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-15142222IPR004330FAR1 DNA binding domain
PfamPF105512.0E-23346438IPR018289MULE transposase domain
PROSITE profilePS509669.458629665IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054640667IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MESYMAVIAE KKTSISEKNL EERYEIIVTS EHEAGKFGNG SAKESLHQVP PFLLNGAGPG  60
MLSEIQTADA DEAFIQELEQ ENGNPILNDE PDDDLNECQE DTAEVEVDCD EDYFFPSPDE  120
VEQARPPEVG MVFATLDDAQ RFVNVYGQVT GFVVYKGRNY KHRKITLQCN KSKKAKENEM  180
RQRKRKRNTI ERTGCPMRVT VKLVEGRWEI MAVQNEHNHP LSSSPSLTRF FLSHKYMSEE  240
EKNFSRILQE SKIKPAKIME VFWRLRRKFK NIPVQKMAVN NLEQSDRLMK IENTDIESTL  300
EHVRRLQKEQ PGFYYAIKTD GDNTVRSIFW TDAQARLDYA LYGDFISFDT SYSTIEYNML  360
FALLIGMNGH GKATVFGWAL LEDERAETFS WLFRTFLDVM DGKKPSTILT HQDSAITKSI  420
AEVFHTAFHR FDMWHVLRKA RDELGSFMAH RGGMETELTH LVSNSVATEE FENGWQAMLE  480
KYDAASNAHL DLMYQTRLMW VPVYFKHVFS PFTQSTGCSK SKHSIFKDYV QQNDTIETFI  540
SQYDIFQEEA VSIEDGDRSQ STLKKPVYST RHPIERHAAE IYTTGMFLRF QKELLDASAF  600
NAFEKERDVI YTVKKALDYE DAEFLRDSFS VDVDLKTNTF NCICSKFERD GIVCCHVLRL  660
FTQFSINMIP EHYIKPRWTK KFREQELQKY CSEKIGSDIS QSSLRYAMIM NRMAESCAAV  720
SKDPNQSKIF LEEHERILWK LTDRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G020600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684165.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3Y5L30.0K3Y5L3_SETIT; Uncharacterized protein
STRINGSi009501m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5