PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G004800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 231aa    MW: 24592.5 Da    PI: 7.3133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G004800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-0591113123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C + F++   L  H+++H
  Sevir.7G004800.1.p  91 YTCSYCRREFRSAQALGGHMNVH 113
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-689118No hitNo description
PROSITE profilePS5015711.40691118IPR007087Zinc finger, C2H2
PfamPF139125.4E-791114IPR007087Zinc finger, C2H2
SMARTSM003550.005391113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MHSLSIHLPN ILATVAKQCA LEKQEQIEET SHANYTGHHS TTPAGHPPTM EGRDHGRGLK  60
QLPSWTLGQN FSLAGGCFPW RSLPSSSSSS YTCSYCRREF RSAQALGGHM NVHRRDRARL  120
RQCCPAWTSS SLPSTTNMAA AAPQQHRDPL PNLNYSPPHC AGGPTAAAEA PVIYSFFSTA  180
TSTVVAAATK PTTTLEVSLE LGIGVCGGHS GEGLAEEGLD LELRLGCAWE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G004800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591933e-39EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.21e-130transcriptional regulator SUPERMAN
TrEMBLA0A368RR521e-167A0A368RR52_SETIT; Uncharacterized protein
STRINGSi011797m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.15e-17zinc finger protein 11