PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G000300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 598aa    MW: 65278.2 Da    PI: 4.7648
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G000300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.22.3e-17181469127
                 NAM   9 PtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                         P+d+ l+  +L+ k+ g+ l+++   +++++diy ++P +L +      + k+e  +w+fF+  + k++t++rk+r++   +g+W++    
  Sevir.7G000300.1.p  18 PSDDRLL-SFLRLKLGGEALPAAAgaHFHDCDIYAADPATLTAgylpalERKGEGYSWFFFTFVRPKSSTDSRKKRMVGggAGTWHSERAP 107
                         9999999.99********966643225**************8557775544445559*******************87645889******* PP

                 NAM  90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         ++vl+ +g+ vg  + + + ++  ++ +e+tdW m e++
  Sevir.7G000300.1.p 108 RAVLDGEGNCVGHTQYFSYKRKtGKSCSERTDWYMVEFT 146
                         *****9**************663566779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.07310171IPR003441NAC domain
SuperFamilySSF1019414.71E-2218170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MATLAADTPQ PDDPAPTPSD DRLLSFLRLK LGGEALPAAA GAHFHDCDIY AADPATLTAG  60
YLPALERKGE GYSWFFFTFV RPKSSTDSRK KRMVGGGAGT WHSERAPRAV LDGEGNCVGH  120
TQYFSYKRKT GKSCSERTDW YMVEFTDGQE GDHDRIHGGE PVLVLCKIYK AHSGSRSSSS  180
SSRSARKRKA TEEHADPSFA PLKAKRRLFS SSAPTQLPAS QEQVSSRVTM TTSRLELQGE  240
AAKVEPEAYH GEIDDHALDD FLLFMKSEFQ IDTTSDYLNF STNPEASQEQ VSSRVTMATS  300
GLELQSEAAK VEPEAYHGET DDDTVDDLLL YWESQCKTNS TSDYKKFSPN PEASASHSKT  360
STRHPSSLMS ETEMSQAKIG DTSDYLRFWP EPEASQGMSN STSDYLKFSP EAEAMENMTN  420
TAPPSLVMSE PGMTAQGKIG STSDYLRLWS DLEAFQGMIN SPSPSLLTSE PWKTFSFGSE  480
PEVSQGMIHS TSEYLNFSPK TEALQKTRTT PRSLLMFEPE VQAPQGESET SALDWGIQMA  540
GVGTTPVLGH CNDNSTTASC SCSLGWFVGA PPKYDMWSTT GFPSSPSMFG GPALWSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G000300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961530.10.0uncharacterized protein LOC101760926 isoform X2
TrEMBLA0A368SLT30.0A0A368SLT3_SETIT; Uncharacterized protein
STRINGSi038541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612