PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G257700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 129aa    MW: 14019.3 Da    PI: 8.8812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-211769156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++a+ +++g+
  Sevir.6G257700.1.p 17 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 69
                        69********.7*********3...2236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-161769IPR001471AP2/ERF domain
CDDcd000186.10E-181776No hitNo description
SMARTSM003806.1E-331882IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-301876IPR001471AP2/ERF domain
PROSITE profilePS5103222.9721876IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-231876IPR016177DNA-binding domain
PRINTSPR003673.4E-101930IPR001471AP2/ERF domain
PRINTSPR003673.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEGGGWDDQG KDAGEATKYR GVRRRPSGKF AAEIRDSSRQ SVRVWLGTFD TAEEAARAYD  60
RAAYAMRGHL AVLNFPGEAR NYVRGGSSSS SSSRQQQQGG SGRQVIELEY LDDQVLQEML  120
KGGDGKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-311511511114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G257700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822510.11e-59ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3L6RM422e-69A0A3L6RM42_PANMI; Uncharacterized protein
STRINGPavir.Fb02184.1.p4e-59(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-23Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]