PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G234300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 360aa    MW: 38338.2 Da    PI: 12.2381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G234300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.5e-21161211155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a++ a+++++g
  Sevir.6G234300.1.p 161 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEDAARAYDDAALRFKG 211
                         68********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-19161221No hitNo description
PfamPF008477.8E-14161211IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22162219IPR016177DNA-binding domain
PROSITE profilePS5103225.317162219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-33162219IPR001471AP2/ERF domain
SMARTSM003805.7E-35162225IPR001471AP2/ERF domain
PRINTSPR003675.2E-12163174IPR001471AP2/ERF domain
PRINTSPR003675.2E-12185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGLVASLASL LSPPPRRERQ AWIVPEKAPP PPPPPPTVAR GRRAMPIQTR QAVACGGPGC  60
CGRRRSAPSS SPRSRTSSAP GGGLLRHRPR RTTASARRRR SRRRPCWGTT SFSKQSDGWI  120
WITGCDRNRP TLIARAISVM RRQAAAAPAT AASSELPPPP PRYRGVRQRP WGKWAAEIRD  180
PVKAARVWLG TFDTAEDAAR AYDDAALRFK GAKAKLNFPP VAFRRPHQAG HQHAGGVFVA  240
APGHHRHHHA AAQLLHRQQS AGESSTSSTR RHPGPVHHLQ SAAPGAAAAT SSAGSAARAH  300
QEEFPDLSRY AHILQSGDLD LLAVAGGGLT PGQSSSTTTA SSSLTAPPEE LPPRREQAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22163219663ATERF1
3gcc_A2e-22163219663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219PPPRRERQ
289104RRTTASARRRRSRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G234300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939967e-72FP093996.1 Phyllostachys edulis cDNA clone: bphyem120j10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683058.11e-102ethylene-responsive transcription factor ABR1-like
TrEMBLK3YIB70.0K3YIB7_SETIT; Uncharacterized protein
STRINGSi013986m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2564555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-15ERF family protein