PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G225300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 178aa    MW: 19954.7 Da    PI: 8.977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G225300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31108164360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vk sefprsYY+Ct+++Cpvk+kve++  d++v ei+Y+geHnh+k
  Sevir.6G225300.2.p 108 DGYNWRKYGQKKVKRSEFPRSYYKCTHPSCPVKRKVETTL-DGQVAEIVYSGEHNHPK 164
                         9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-2797165IPR003657WRKY domain
PROSITE profilePS5081122.045101165IPR003657WRKY domain
SuperFamilySSF1182903.53E-24103165IPR003657WRKY domain
SMARTSM007741.3E-32106164IPR003657WRKY domain
PfamPF031061.4E-24108163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQHHEKIAAL KPVASRPFSS FRSLPKLLQD FTATGSPPIT VLEETVPVRP KATRFPSLPS  60
DLRTEMTATI DAGSDTTHEE MEVDTEQANC CDHLTACHTA KKPRLSFDGY NWRKYGQKKV  120
KRSEFPRSYY KCTHPSCPVK RKVETTLDGQ VAEIVYSGEH NHPKPHPPRK LLSPTSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-1696165474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G225300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2428557e-49AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence.
GenBankAP0149677e-49AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAP0149687e-49AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAY3418607e-49AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
GenBankBX0004967e-49BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0005037e-49BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankBX0725487e-49BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126207e-49CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683533.11e-127uncharacterized protein LOC101761160
SwissprotQ9ZQ706e-31WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLK3YL181e-129K3YL18_SETIT; Uncharacterized protein
STRINGSi014939m1e-129(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-33WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]