PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G217800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 24389.8 Da PI: 9.0415 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.9 | 1.7e-10 | 35 | 80 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 GVr + +g ++AeIr ps+ rkr+++g+f a +Aa a++aa+ + Sevir.6G217800.1.p 35 VGVRKRL-WGGYAAEIRIPSS---RKRVWIGRFQHAMQAALAYDAAMFLF 80 59**887.**********965...4*********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.595 | 33 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-15 | 33 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-12 | 34 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-19 | 35 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.18E-15 | 35 | 96 | No hit | No description |
Pfam | PF00847 | 7.0E-5 | 35 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MASSAANGSS GAAREQGRAR LAAGGGGLRR DMGWVGVRKR LWGGYAAEIR IPSSRKRVWI 60 GRFQHAMQAA LAYDAAMFLF YGKTLPKLRR YNFPEAPRPS FPEFVRRALT VANVKAIAEE 120 HARSVGRFAP LPPPVIPAPS APLQVAEAAG GAAAAGAGVA VEAAAAGAGV AVDIAPAAGV 180 GATTTAADRR VNDEIYIDAD ILTGADCQFS GAPVPDEDFV RLMDMDVDLI FGDI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G217800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974850.1 | 1e-162 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A368RNW8 | 1e-160 | A0A368RNW8_SETIT; Uncharacterized protein | ||||
STRING | Si014894m | 5e-71 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 2e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G217800.1.p |