PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G213300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 630aa    MW: 65585.8 Da    PI: 10.0029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G213300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-102372445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                        W t+E++ll++av+++G+ +W+++a +++         ++t+  c+++++
  Sevir.6G213300.1.p 23 WGTWEELLLACAVRRHGTASWDSVAMEVQsrcpaaaaPRLTPTGCRLHFR 72
                        *****************************999999999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00321977IPR001005SANT/Myb domain
PfamPF002494.9E-92372IPR001005SANT/Myb domain
CDDcd001672.77E-52374No hitNo description
Gene3DG3DSA:1.20.920.102.7E-13277417IPR001487Bromodomain
SMARTSM002979.1E-11285396IPR001487Bromodomain
SuperFamilySSF473701.83E-14289392IPR001487Bromodomain
PfamPF004395.7E-10302381IPR001487Bromodomain
PROSITE profilePS5001410.65304377IPR001487Bromodomain
CDDcd043691.12E-13307391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAGG EIWGTWEELL LACAVRRHGT ASWDSVAMEV QSRCPAAAAP  60
RLTPTGCRLH FRLLHRRFAA GAGDVDEDPD AAAADGWVEE LRKLRVAELR REVERYDLSI  120
GSLQSKVKRL KEERERSISG EANLPAVKAE EGEEPAAGKG SLEDDAGGGE DRVSGGESGR  180
SCKESNSSDL KRPVHDAGTA SAAVDGAAAA KEEGEEEEAA AGESLAVKRE EVSGESVARS  240
KETDKESSDV QSSASPSRRR EREGGGGAGV EEAEAEEASA STSARAALPA AEAEALLAFL  300
ESVRTSKPGS VFERRLESQD DAKYRSTIRR HVDLETVRSK LEGGGGACYS SASEFYRDLL  360
LLCANALVFF PRGSPEHSAA TRTRALVSKH IPASLRKDQP GTSGKAAAPA SKKAKAEADV  420
GSLLEKTAPI IVCRKRSSIA KAAAAAAKEE KAEKGETDKE ENEASKKAGG TKDKARGLRT  480
NKTRAAPVRK AAPNQKTEDN GSDSDAPAEG TKKPGKKGGS SAVGSGAGVA KKRNAVNFLN  540
RMKQGSAPST ERVSLLETLK LSAAAEQKKA GKGSEGKKEP AGGSGSKRGR GTPPGRRNIG  600
RPPKRAAAPP SPPPAKRARG GGTKRGGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G213300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856041e-126BT085604.1 Zea mays full-length cDNA clone ZM_BFc0038F08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702097.10.0uncharacterized protein LOC101782059
TrEMBLK3YGP00.0K3YGP0_SETIT; Uncharacterized protein
STRINGSi013408m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-19DNA-binding bromodomain-containing protein