PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G187800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 30014.4 Da PI: 5.24 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 139 | 188 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAaka+++a+ +++g Sevir.6G187800.1.p 139 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAAKAYDRAAIEFRG 188 8********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.1E-32 | 139 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 139 | 202 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 139 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.132 | 139 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 139 | 197 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-11 | 140 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-29 | 142 | 196 | No hit | No description |
PRINTS | PR00367 | 3.0E-11 | 162 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MTNRIFSAMA ANQAYMIRFD GHLDDPSPSS AGAEPPEVSQ QQPPPPFAGR VISPEQEHQV 60 IVAALLHVVS GYTTPPPEIF PAAAAGAACR VCGMERCLGC EFFGGEGAEV IALDGGAAEN 120 NNAAVAAGGQ RRRRKKKNKY RGVRQRPWGK WAAEIRDPRR AVRKWLGTFD TAEEAAKAYD 180 RAAIEFRGPR AKLNFPFPEQ LAHDEASNGD ASAAARSSDN TQSPSLCSGD AEERGQPAEW 240 PPRGGQETGE QLWEGLQDLM KLDEGELWFP PTSSAWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 136 | 197 | 2 | 64 | ATERF1 |
3gcc_A | 3e-21 | 136 | 197 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RRRRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G187800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973673.1 | 0.0 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 1e-30 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | K3YJ18 | 0.0 | K3YJ18_SETIT; Uncharacterized protein | ||||
STRING | Si014237m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-27 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G187800.1.p |
Publications ? help Back to Top | |||
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