PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G176900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 223aa    MW: 23645.1 Da    PI: 5.0552
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G176900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-172473255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Sevir.6G176900.1.p 24 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 73
                        7******99.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-102473IPR001471AP2/ERF domain
CDDcd000183.99E-182484No hitNo description
SuperFamilySSF541711.57E-182483IPR016177DNA-binding domain
SMARTSM003802.2E-322488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-282484IPR001471AP2/ERF domain
PROSITE profilePS5103221.8652482IPR001471AP2/ERF domain
PRINTSPR003671.4E-82536IPR001471AP2/ERF domain
PRINTSPR003671.4E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDDGAGGASR SDGEGSPRPA AERRYKGVRL RKWGRWVSEI RMPNSRERIW LGSYESAEKA  60
ARAFDAAAVC LRGSRAGSLN FPESPPNVRH VPGALLTPEQ IQAEAVRHAN QPASPLASSP  120
SQQATTPGGG ASTDRTALSQ PSTYGSGASL AGGDDALDWS FMDTLPSMPA AGTNAHHIVP  180
ALDDFMYGSP HPVMPPSGEP SQDMMIDGDD DHTFISDDLW RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1224821472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G176900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973610.11e-160ethylene-responsive transcription factor ERF018
TrEMBLK3YLA41e-158K3YLA4_SETIT; Uncharacterized protein
STRINGSi015027m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.12e-24ERF family protein