PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G175800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 350aa    MW: 39186.5 Da    PI: 9.5393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G175800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1999148255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp++    +r++lg++ t+eeAa+a++  ++k++g
  Sevir.6G175800.1.p  99 PYRGIRRRP-WGKWAAEIRDPRK---GARVWLGTYKTPEEAARAYDVEARKIRG 148
                         59*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-3699162IPR001471AP2/ERF domain
PROSITE profilePS5103224.14499156IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2299158IPR016177DNA-binding domain
PfamPF008472.6E-12100148IPR001471AP2/ERF domain
CDDcd000181.86E-32100157No hitNo description
Gene3DG3DSA:3.30.730.101.9E-31100158IPR001471AP2/ERF domain
PRINTSPR003678.2E-11100111IPR001471AP2/ERF domain
PRINTSPR003678.2E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAQERIQGKK IENCGKYRAK RVWKIDEDEE DYEADFQVFL KESNEEDKKH HKFIALMDVS  60
GSRKEKVGLD FLKKDAIIHK PLPTDKRPVV RTKHKRKNPY RGIRRRPWGK WAAEIRDPRK  120
GARVWLGTYK TPEEAARAYD VEARKIRGNK AKVNFPDEAP PNMMSNTTKP TVIAMPTIPF  180
LAEKFSTNSL VSHSKNSNED LFSVVNFNGK NARSIPTDGF ELPSMKIPHA SYEIPRMGGN  240
GLCNEANRNM NASSCLPHAS LPTLSQPTFP GPSTMIESNT GTIVPTLSNA TPNVLFGAAS  300
DDAGTKIDQQ PIPQVMENEY IPSILNGDVS EDVAAEISMW KFYDRLPAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-201001671581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G175800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974759.11e-163uncharacterized protein LOC101761413
TrEMBLK3YME10.0K3YME1_SETIT; Uncharacterized protein
STRINGSi015420m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-32ethylene-responsive element binding protein