PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G174600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 213aa    MW: 22753.4 Da    PI: 5.1749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G174600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-161460148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + +W++eEde l  av+++G  +W++Ia  +  gR +k+c++rw ++l
  Sevir.6G174600.1.p 14 KTPWSAEEDEALRAAVREHGRQNWAAIAGAVA-GRGAKSCRLRWCQHL 60
                        579*****************************.***********9986 PP
2Myb_DNA-binding49.88e-1668109346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++T+eEd ++v+  + +G++ W+tIar++  gR+++ +k+rw++
  Sevir.6G174600.1.p  68 PFTPEEDARIVEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 109
                         89******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.014964IPR017930Myb domain
SuperFamilySSF466892.26E-2912107IPR009057Homeodomain-like
SMARTSM007178.9E-161362IPR001005SANT/Myb domain
PfamPF002498.6E-151460IPR001005SANT/Myb domain
CDDcd001675.55E-141660No hitNo description
Gene3DG3DSA:1.10.10.606.4E-221667IPR009057Homeodomain-like
SMARTSM007174.0E-1265113IPR001005SANT/Myb domain
PROSITE profilePS5129418.14467115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2068113IPR009057Homeodomain-like
PfamPF002494.7E-1368109IPR001005SANT/Myb domain
CDDcd001676.44E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAAECGEGKA DCKKTPWSAE EDEALRAAVR EHGRQNWAAI AGAVAGRGAK SCRLRWCQHL  60
APELDSRPFT PEEDARIVEQ QRVHGNKWAT IARYLHGRSD NAVKNRWNSA LRKMQPAAAA  120
QEDAADAAED QQAAAPACLD LFPLRAGEMR EATAADRLGV RAQGEVEEDV ASIGLTLGSP  180
GLSDAELELS LGPVRPSSNL GVGEAASFRL FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2881131106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G174600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037981e-87AP003798.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1005_H01.
GenBankAP0149641e-87AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-87CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974756.11e-152transcription factor MYB1
SwissprotQ9SN122e-41MYB77_ARATH; Transcription factor MYB77
TrEMBLK3YND51e-150K3YND5_SETIT; Uncharacterized protein
STRINGSi015776m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-36myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]