PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G166200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 30825.7 Da PI: 9.6539 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+ G+g+W++++ g+ R+ k+c++rw +yl Sevir.6G166200.1.p 14 KGPWTPEEDLVLVSYVQDNGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sevir.6G166200.1.p 67 RGNFSVQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.882 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.63E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.2 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.59E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ DNGPGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF SVQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLSKAG 120 AAEAKSGRSA AAKGQWERRL QTDIHTARQA LRDALSLDPM LPPAKTEPLP LPPAPAPASQ 180 AAYASSTQNI ARLLEDFMRP RAGSGSGGKA SSGSRSSASA VSGGEGAASA SHSGSGTTRT 240 PEGSTGTSKA EDAGPAPPFS MLESWLLDDG MGHGDAGLMG VPLSDPCQFF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-24 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-24 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G166200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837778 | 1e-119 | CT837778.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973531.1 | 0.0 | myb-related protein 306 | ||||
Swissprot | P81392 | 1e-99 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | K3YIW4 | 0.0 | K3YIW4_SETIT; Uncharacterized protein | ||||
STRING | Si014183m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 4e-82 | myb domain protein 96 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G166200.1.p |
Publications ? help Back to Top | |||
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