PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.6G165000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 40324.1 Da PI: 8.9506 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.9e-16 | 79 | 124 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ Sevir.6G165000.1.p 79 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 124 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 132 | 174 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l a++ +G++ W+ Iar ++ gRt++ +k++w+ Sevir.6G165000.1.p 132 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 174 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.78 | 74 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-14 | 78 | 127 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-27 | 79 | 172 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-26 | 80 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.24E-13 | 82 | 123 | No hit | No description |
Pfam | PF13921 | 9.8E-16 | 82 | 142 | No hit | No description |
PROSITE profile | PS51294 | 24.91 | 126 | 180 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 130 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.90E-10 | 133 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-20 | 133 | 179 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MPCSSPAAPA WLLRVATAAA AADQASSSTS SKGGGRVLTA GTTTMDTGAT AAGGCGGGNA 60 SAIDHQESSS SGQSRLAARG HWRPAEDAKL RELVALYGPQ NWNLIAEKLD GRSGKSCRLR 120 WFNQLDPRIS KRPFSDEEEE RLMAAHRFYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY 180 REQSTAYRRR KLNQAVQRKL EAVAVAMPPT AGPGNAAAGG GHHHNILAAA AAAAAAHDAA 240 YGFGADPYGF SFRHYCSFPF PPGAASPEDH PPPPPPPPFC LFPGPGGAAA AHADRRLPWL 300 SSDGGSGGGR YGEPPLLLPV PGVGWIDGIS MGGGGGGHHE PHQFVLGHDA GAAAFEGTAT 360 RQGAGAHFDA AAAAAPSPAF IDFLGVGAT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 79 | 179 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.6G165000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973514.3 | 0.0 | probable transcription factor MYB58 | ||||
TrEMBL | A0A368RMF0 | 0.0 | A0A368RMF0_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G428555_P03 | 1e-162 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-70 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.6G165000.1.p |