PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G146500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 289aa    MW: 30623.6 Da    PI: 5.7143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G146500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21110159255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Sevir.6G146500.1.p 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 159
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.71E-30109169No hitNo description
Gene3DG3DSA:3.30.730.108.7E-33110169IPR001471AP2/ERF domain
SMARTSM003801.5E-35110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.354110167IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-23110169IPR016177DNA-binding domain
PfamPF008477.0E-15111159IPR001471AP2/ERF domain
PRINTSPR003672.4E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.4E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAAAINLPGP AGEDLMRAME SFMQEDAPSP PLAMQPAPAT FPPPPPFPAG AHGLSYPPAT  60
HLTPAQMQFI QAQLHLQRNP GLGPRAQPMK PAVPVPPAPA PAQQQRPQKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAAYRLRGD AARLNFPDNA ASRAPLDSAV  180
DAKLQAICAT IAAASSKGGR AKSKATPINA PVVDAEAAAS NSSSDEGSGS GSDDEMMSSS  240
SPLPAPPAAP LAEIGQLNFG EVPWDEAESF VLRKYPSYEI DWDALLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20109167463ATERF1
3gcc_A6e-20109167463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G146500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973405.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A368RLC40.0A0A368RLC4_SETIT; Uncharacterized protein
STRINGPavir.Fa01600.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-33ERF family protein