PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G128100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 168aa MW: 19421.4 Da PI: 9.4928 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.9 | 1.9e-19 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 f+n+YA + F+v +++ +++ k+n+ei + +++C+++gk+ ++k+ e++++ + +t+C+ ++vk++ +g w++ kl+l+HnHel Sevir.6G128100.1.p 12 FFNFYAFLAVFQVPITHVSRTthkKQNNEIFRVEMKCKCHGKPPKKKTI--GEEEEEIQVKTNCQVVMVVKEN-KGIWKIGKLDLDHNHEL 99 9************999887777779999**************9998876..899999**************99.****************9 PP FAR1 90 a 90 Sevir.6G128100.1.p 100 W 100 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-17 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MECKDKDDAH HFFNFYAFLA VFQVPITHVS RTTHKKQNNE IFRVEMKCKC HGKPPKKKTI 60 GEEEEEIQVK TNCQVVMVVK ENKGIWKIGK LDLDHNHELW PQSRNQLFSG HKYMTDMEKA 120 MIRTLNDNNI PTGKMISILS YLRGGLTALQ QQQQQQQHSL SILSKLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G128100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303846.1 | 5e-67 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A3L6QAT4 | 4e-75 | A0A3L6QAT4_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Fb01661.1.p | 1e-66 | (Panicum virgatum) | ||||
STRING | Sb09g021205.1 | 7e-68 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15170 | 7 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G128100.1.p |