PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G104600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 282aa    MW: 28425.6 Da    PI: 6.8984
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G104600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21e-051658542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ ++   +  +C  +   lC  C  + H        H++vp+
  Sevir.6G104600.1.p 16 ACAVCGGV-AAVYCAADAAALCTPCDAAVHAAnllasrHERVPI 58
                        6*****99.*********************66899999999997 PP
2CCT66.57.3e-23189232144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R a+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Sevir.6G104600.1.p 189 RVARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 232
                         89****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
SMARTSM003362.3E-111258IPR000315B-box-type zinc finger
PROSITE profilePS501199.3851258IPR000315B-box-type zinc finger
PfamPF062032.5E-17189231IPR010402CCT domain
PROSITE profilePS5101716.331189231IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MMRSEGSTSP AAGGAACAVC GGVAAVYCAA DAAALCTPCD AAVHAANLLA SRHERVPISM  60
AAVAAASGVY DDLFAPDDVD AASSWPAAVA QGQGSPQNGS SSASFTTSDS GTEGRSLFDL  120
LSDVDLAAAC VTGGGGYLPD GVAPVHHGGA PLWAQPGMAA AWATTWSPAD AAAVVVPGAA  180
AVVAAAAERV ARVQRYREKR KNRKFQKTIR YASRKAYAEA RPRIKGRFVK RAAGAATSDN  240
AAAATNASDS SKFWLSFSDD ARDDGVGFYV DAAAYGVVPS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G104600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.10.0zinc finger protein CONSTANS-LIKE 1
TrEMBLK3YJ050.0K3YJ05_SETIT; Uncharacterized protein
STRINGSi014224m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-18CONSTANS-like 3