PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G088400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 358aa    MW: 39734.7 Da    PI: 9.6035
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G088400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-49291542128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v
  Sevir.6G088400.1.p  29 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMV 118
                         79***************************.89***************888889************************************** PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +glkktLvfy g+apkg +++W+m+eyrl
  Sevir.6G088400.1.p 119 RVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 154
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5628174IPR003441NAC domain
PROSITE profilePS5100555.24628174IPR003441NAC domain
PfamPF023656.0E-2430154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGGDHHHHQH HGGAGGGDDG QQQAHDMVMP GFRFHPTEEE LIDFYLRRRV EGKRFNIELI  60
NLVDLYRYDP WDLPALASIG DKEWFFYVPR DRKYRNGDRP NRVTPSGYWK ATGADRMVRV  120
EGNRSIGLKK TLVFYVGKAP KGLRSSWIMN EYRLPHGEAD RYQKEISLCR VYKRPGIEDN  180
FHLTTNTRSS GSKAAASMEK KHHRTSASPR LAPMFDGGHS SSAHMNKPYS GTIMASSAAA  240
RAAATMAPQT SMAFLSTASL SSTTSTEEDG TSLYHMKGAN PQLLPSSTHA LLNANSTTMA  300
TIPIDELSRA IGSYSNQGNP NQPLPSSQGP LLPFPSMEKI WDWNPLLESP KVCTNFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-533017419165NO APICAL MERISTEM PROTEIN
1ut4_B3e-533017419165NO APICAL MERISTEM PROTEIN
1ut7_A3e-533017419165NO APICAL MERISTEM PROTEIN
1ut7_B3e-533017419165NO APICAL MERISTEM PROTEIN
4dul_A3e-533017419165NAC domain-containing protein 19
4dul_B3e-533017419165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G088400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0607430.0BT060743.1 Zea mays full-length cDNA clone ZM_BFb0041P20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973013.10.0NAC domain-containing protein 35
SwissprotQ9ZVP82e-94NAC35_ARATH; NAC domain-containing protein 35
TrEMBLK3YIC60.0K3YIC6_SETIT; Uncharacterized protein
STRINGSi013995m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.28e-96NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]