PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G074500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LSD | ||||||||
Protein Properties | Length: 160aa MW: 16794.2 Da PI: 8.7854 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 24.6 | 4.3e-08 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gC+ +L Y rGA+ V+C+ C+t Sevir.6G074500.3.p 7 CSGCKRVLEYRRGATGVCCPGCNT 30 ***********************9 PP | |||||||
2 | zf-LSD1 | 23.8 | 7.5e-08 | 46 | 68 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 CggC t+L Y rGA ++RC+ C Sevir.6G074500.3.p 46 CGGCFTMLVYNRGAANIRCPHCG 68 **********************7 PP | |||||||
3 | zf-LSD1 | 25.7 | 1.9e-08 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GA+ V C+ C V Sevir.6G074500.3.p 84 CGHCRTTLAYPPGASTVGCPTCRCV 108 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.6E-8 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.2E-6 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.4E-9 | 44 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.0E-9 | 46 | 68 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.4E-8 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.9E-8 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MQDQLICSGC KRVLEYRRGA TGVCCPGCNT FTAANPSGSE MSELVCGGCF TMLVYNRGAA 60 NIRCPHCGRV NSTRSANQIG HLSCGHCRTT LAYPPGASTV GCPTCRCVNP VRNNNSGGSA 120 RPAQSDARPQ TVLVENPKTL DEKGKLVSNV AVGVTSWKR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G074500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972942.1 | 1e-113 | protein LOL4 isoform X2 | ||||
Swissprot | Q84UR0 | 4e-78 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | A0A368RJH2 | 1e-112 | A0A368RJH2_SETIT; Uncharacterized protein | ||||
STRING | Si014280m | 1e-111 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-39 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G074500.3.p |
Publications ? help Back to Top | |||
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