PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G052800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 671aa    MW: 74322 Da    PI: 4.5353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G052800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-5291421128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd
  Sevir.6G052800.1.p   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKD 99 
                         699************************9999****************96446677888********************************* PP

                 NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + ++sk    k++++g+kktLvf++grapkge+t W+mheyr 
  Sevir.6G052800.1.p 100 RIIKSKgdkrKQHVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                         *****988767777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-593163IPR003441NAC domain
PROSITE profilePS5100557.289163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGDKRK QHVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFDSG EQGGYVLYRL FRKQEEKPER ASPEEVDRSG  180
YSPTPSRSSP DNIEANEEAN TPLNRESPES GLHESPIELP KSVETHAMPM TRWLAGRNDN  240
LVPTAADVSH MPFNGHADVP EVNPSAGASA QLINPQNGND NLTNFAPDIA PNLQHGNAFV  300
PDLQEIAFGF DGNMNPPDAL DVFLNQALVD PDEHSSTTSR VHYDSDIPTE FENNGVAQGE  360
DDQSWWANLD FLSDEPNPLN SAYENTPLLP YDANDQDVLS VDSGADSLHE LFNNMEDSNA  420
RRAGMNIEYG LQGTGISLMP RQLQSSAQPN YVLTNQGTAS RRLRLHLPAD FESESITRDE  480
SEDEVSCVVT ADRDVVSDGD EAESTGIVIR SRPAPSSSSE SSFTQQGTAV RRLRLQSDLK  540
TGPCPSTDDT SSCIINETES HHKAEKSEIA EDASKNFAGS VDDLSVNWDD NEQKTMPQHV  600
AEMAVPEAKP VPRLRKASEK SDKDTIKQES GLESLVRAPA QKGGFQSYTA WLVLSVVLLL  660
LLSVGVYGWM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46816416166NO APICAL MERISTEM PROTEIN
1ut4_B3e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_A3e-46816416166NO APICAL MERISTEM PROTEIN
1ut7_B3e-46816416166NO APICAL MERISTEM PROTEIN
4dul_A3e-46816416166NAC domain-containing protein 19
4dul_B3e-46816416166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G052800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972796.10.0protein NTM1-like 9
TrEMBLK3YGK10.0K3YGK1_SETIT; Uncharacterized protein
STRINGSi013369m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-74NAC 014