PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G050900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 322aa    MW: 33387.3 Da    PI: 8.7201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G050900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07170213242
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcks 42 
                         g WT +E ell +   +++ g   +W++Ia+ +g +Rt++++++
  Sevir.6G050900.1.p 170 GEWTDQELELLRRQMVKHPAGepqRWEKIAAVFGGRRTPESVIH 213
                         78********************************999*999976 PP
2Myb_DNA-binding23.21.6e-07259302243
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                         g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
  Sevir.6G050900.1.p 259 GAWSAGDDRALLNALKEFPKDtamRWEKVAAAVP-GKTKAACMKR 302
                         79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.156164211IPR017877Myb-like domain
SMARTSM007170.011168221IPR001005SANT/Myb domain
PfamPF002493.7E-6170213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-4170205IPR009057Homeodomain-like
SuperFamilySSF466891.57E-7170213IPR009057Homeodomain-like
CDDcd001676.60E-6171213No hitNo description
PROSITE profilePS500906.934253307IPR017877Myb-like domain
SMARTSM007179.4E-7257309IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-10257308IPR009057Homeodomain-like
PfamPF002499.8E-7259302IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-5259306IPR009057Homeodomain-like
CDDcd001676.00E-7260307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFVDPWDSQ SRARVVHSGA NSTSSPSSST TARASPSLPH AASCAATAVA LLAAAFYLPP  60
AYQIFSSLLV WVASSLLLAP FAPSSATGGD ISVGRGRLLP AQEPAQEEPI PDSAPAPRRG  120
RRQNPAPTPT KPSDPIAAPV QSAASLQPLQ KAAAAGGAAV DGGEREEDAG EWTDQELELL  180
RRQMVKHPAG EPQRWEKIAA VFGGRRTPES VIHVAKSGAA AAGGGSFEQF LRKRKPLDPR  240
ADGPDAGDNA GGGGESADGA WSAGDDRALL NALKEFPKDT AMRWEKVAAA VPGKTKAACM  300
KRVTELKRDF RSNKAASEAA S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G050900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972787.10.0dnaJ homolog subfamily C member 2
TrEMBLK3YIP40.0K3YIP4_SETIT; Uncharacterized protein
STRINGSi014113m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.17e-37MYB_related family protein