PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G025900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 312aa    MW: 33484.9 Da    PI: 4.6382
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G025900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC152.86.2e-481522541100
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw+ q    e+atd+k h+lPlarikki+kadedvkmi+aeaPv+++kace+fileltlrswlh+e +krrt+++sd++aa+   ++
  Sevir.6G025900.1.p 152 QLQAFWAGQlaeAEQATDLKVHSLPLARIKKIMKADEDVKMIAAEAPVVFAKACEMFILELTLRSWLHTEGTKRRTMQRSDVSAAIMANEM 242
                         89*****9988789***************************************************************************** PP

               NF-YC  89 fdflvdivprde 100
                         fdfl+d+ p+++
  Sevir.6G025900.1.p 243 FDFLMDVTPTEQ 254
                         ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-27160246IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-33167237IPR009072Histone-fold
PfamPF008089.3E-19174237IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDQHSQINKV VGGATNVDTP AASYALTPFL QRVPMESVPP SSVGAAFLPF SASQGSVAYP  60
SAILPLLSNQ QPSQIDPFEA ATNDAAYALT ALTTYNHQPE ALASVPPSSS AGATFLPAPA  120
SQGAPTAYQA AIPPPLSNQH QAALLQKLQQ QQLQAFWAGQ LAEAEQATDL KVHSLPLARI  180
KKIMKADEDV KMIAAEAPVV FAKACEMFIL ELTLRSWLHT EGTKRRTMQR SDVSAAIMAN  240
EMFDFLMDVT PTEQQTNGDG VLPPPPPPQT TAGQVPFPMH VPFPMYANQQ PPFMWPTPEY  300
QQQQNPDGGN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-43160251394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224230RRTMQRS
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G025900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614941e-33AK361494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141P02.
GenBankAK3722951e-33AK372295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2149D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683306.10.0nuclear transcription factor Y subunit C-6-like
SwissprotQ8LCG75e-50NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A368RHD90.0A0A368RHD9_SETIT; Uncharacterized protein
STRINGSi015775m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-46nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]