PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G022700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 21090.9 Da PI: 8.8745 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.4e-20 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+e+Aa+a++aa++kl+g+ Sevir.6G022700.1.p 31 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAARKLRGP 81 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.21E-19 | 30 | 90 | No hit | No description |
Pfam | PF00847 | 3.2E-14 | 30 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-21 | 31 | 89 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-31 | 31 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.367 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-30 | 33 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MAPKRSTSPA GSSSSGSGVF APAAAAEQHP RLRGVRKRPW GRYAAEIRDP VRKARVWLGT 60 FDTPEQAARA YDAAARKLRG PSATTNYPAA DAKGAASGNT VLSEDASSSS SSSRDSPLAV 120 TVAVAAAPPP SLDLSLALPT TPSCCQMFLD PTMMVAGAPA LLQFLPPKSE EGQSLSCSSS 180 SSVVLDAAPA AGLGLDLNLA LPAQMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 28 | 88 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G022700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 2e-65 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972569.1 | 1e-93 | ethylene-responsive transcription factor 11 | ||||
Swissprot | O80340 | 2e-30 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | K3YJQ0 | 3e-92 | K3YJQ0_SETIT; Uncharacterized protein | ||||
STRING | Si014469m | 6e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-21 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G022700.1.p |