PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.6G022600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 20446 Da PI: 9.6301 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 25 | 75 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr ++ +gr++AeIrd + r +r++lg+f+t+e+Aa+a++aa++kl+g+ Sevir.6G022600.1.p 25 RLRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTPEQAARAYDAAALKLRGP 75 679******.**********44.....55**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-14 | 24 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.72E-19 | 24 | 81 | No hit | No description |
PROSITE profile | PS51032 | 23.67 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 25 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-30 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 27 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MAPKRSTSPA GSSSSGSGSG AEQPRLRGVR KRPWGRYAAE IRDPVRKARV WLGTFDTPEQ 60 AARAYDAAAL KLRGPGATTN YPAADAKAAA APATSGSGSG SIVLSEGASS SSSSSRDSPL 120 APSLALPATA AAQPCHLFLD PTTTTVVVVA PALLQFLPPK SEEEHSFAGS SSSPPVVFDS 180 APPAVGLGLD LNLALPAPGT MVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-23 | 13 | 82 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.6G022600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM493723 | 2e-74 | AM493723.1 Saccharum officinarum mRNA for ethylene responsive transcription factor (ERF3 gene). | |||
GenBank | EU970153 | 2e-74 | EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | EU975388 | 2e-74 | EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds. | |||
GenBank | KJ727706 | 2e-74 | KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972568.1 | 1e-138 | ethylene-responsive transcription factor 11 | ||||
TrEMBL | K3YJQ5 | 1e-137 | K3YJQ5_SETIT; Uncharacterized protein | ||||
STRING | Si014474m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28370.1 | 5e-22 | ERF domain protein 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.6G022600.1.p |