PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G456700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 449aa MW: 48586.5 Da PI: 6.57 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 401.8 | 6.8e-123 | 50 | 443 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPi 90 l++lLl+cA a ++g l +a+a+L+++ la+pdgd+mqR+aa f+eALa+r +r +++l++al p++++ +e +aa++ f +++P+ Sevir.5G456700.1.p 50 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAAP--AAAELAAARRHFLDLCPF 138 689************************************************************95455544..68999999999******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 l+++ +aNq Ilea+e+e+ vH+iD++ +QW+ Ll+ La+Rpegpp+lR+T+v++ +k+ l +t+ L+k Ae+l+vpf+fn+ Sevir.5G456700.1.p 139 LRIAGAAANQCILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHLRLTAVHE----HKDVLAQTAMALTKEAERLDVPFQFNP- 224 ***********************************************************....9**************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrll..........................desvsleserdevLklvkslsPkvvvvveqea 246 v+ rl++l++e+Lrvk+gEala+ ++lqlh ll + +++s+ d++L ++++lsPk++v++eqea Sevir.5G456700.1.p 225 VVCRLDALDVESLRVKTGEALAITSSLQLHCLLasdddsaagagkdnnnsnkterrspeSGLSPSTSRADAFLGALWGLSPKLMVLTEQEA 315 6899***************************************************997522233444789********************* PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 +hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr llg+ei+n+vac g errerhe+l +W +r+e aGF+ vp+s++a qa Sevir.5G456700.1.p 316 SHNAAALTERFVEALNYYAALFDCLEVVAARGSVERARVERWLLGEEIKNIVACDGVERRERHERLDRWAARMEGAGFGRVPMSYYALLQA 406 ******************************************************************************************* PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + + dg++v ee+gs++l+W+dr+++svSaWr Sevir.5G456700.1.p 407 RRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 443 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 56.259 | 24 | 423 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-120 | 50 | 443 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MVQDEGSSSS VTSSPLHNFS AMPLHPAAAA APTPPWLLRE LRSDERGLCL IHLLLNCAAA 60 AAAGRLDAAN AALEHIASLA APDGDAMQRV AAAFAEALAR RALRAWPGLC RALLLPRAAP 120 AAAELAAARR HFLDLCPFLR IAGAAANQCI LEAMESEKIV HVIDLGGADA TQWLELLHLL 180 AARPEGPPHL RLTAVHEHKD VLAQTAMALT KEAERLDVPF QFNPVVCRLD ALDVESLRVK 240 TGEALAITSS LQLHCLLASD DDSAAGAGKD NNNSNKTERR SPESGLSPST SRADAFLGAL 300 WGLSPKLMVL TEQEASHNAA ALTERFVEAL NYYAALFDCL EVVAARGSVE RARVERWLLG 360 EEIKNIVACD GVERRERHER LDRWAARMEG AGFGRVPMSY YALLQARRAA QGLGCDGFKV 420 REEKGSFFLC WQDRAIFSVS AWRGRRFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-60 | 38 | 445 | 7 | 381 | Protein SCARECROW |
5b3h_A | 5e-60 | 38 | 445 | 6 | 380 | Protein SCARECROW |
5b3h_D | 5e-60 | 38 | 445 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G456700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097535 | 0.0 | FP097535.1 Phyllostachys edulis cDNA clone: bphylf044j19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971220.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_022682001.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 1e-170 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A368RFP6 | 0.0 | A0A368RFP6_SETIT; Uncharacterized protein | ||||
STRING | Sb03g045660.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-116 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G456700.1.p |
Publications ? help Back to Top | |||
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