PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G449000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

HB-other

Protein Properties

Length: 1227aa MW: 134264 Da PI: 8.4076

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G449000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.6	2.9e-05	74	130	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++lF+ + ++ ++e +e++ +g+t +qV+ +F ++ + +k Sevir.5G449000.1.p 74 KRPRDLLNPKAVKCMQSLFALKDTIGKKETREISLLCGVTVTQVREFFTCQKSRVRK 130 799*********************************************999999886 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 1227 aa Download sequence Send to blast
MELVPFKPAA GALAEAGFGA GAGSIPAMVA AQQEMLHEQV DQLQRLVVAQ CRLTGVNPLA 60 QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF 120 FTCQKSRVRK FVRLSQEKAL RVEAPKELDN AFSMSTEQIP LDIEAHAEVV EPLRTLEPVV 180 PRSSSQPMDV PQVSSQPMEL SQSCLQPMEA FQNSLQQATA QQYFAAPVMP SGTMVVQPTD 240 AKISPDSVRK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLME WILQINNVTV 300 LSWFVTMGGL TIMSTWLSLA ANEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR 360 FYRTPDISSK ARNLLSRLSK VLVRSQALKK PQKDLICKQR ISEILRDESW KSEVDITEEV 420 LALTDGANES SKPEPRKTQM LLTASADETN KRSAMQTKSK QKRKVLLVEH PNKKAAVKNV 480 NSARNSTNNS RPLSADDIQK AKMRAMFMQE KYGKVDSSKA SDKSQAMETP KTSGLVNSNV 540 LPVPRDPIRS TAQPFDASTS STAQPVDPST STSKQSTVPQ PDKPEISNGL KLNIGSPKNV 600 VEKLDSKRVP WRIPPAVWID PSWSVSAGDN SKELEVQTQR NRREKETFYA SQKDIPLNPK 660 DPWDLEMDFD DSLTPEIPID QAPDADTMEM DSVGAAPNAA APVKDKQIGS TATSVAVADG 720 ANGEDPEPDL ELLTVLLKNP QLVFALTSNN GEDVSSEQTV ALLDTLKRTG LGLSELVNTL 780 GNGAGAPKEP EPEPIPASLP SPTPSDQTAR AVWGPEHPTQ ARAPNLQQPP LSNRGNTPPI 840 ANTVQQSFSN VMSSLPSQPY ASVSVLPAQI QANVPSLPQL AVSVNPPVQH VSPVNNHLSR 900 ASVHQHAQQY ALASDPVAMS LHQQAAVNKS THGLQSVPNP AVAHSSLPEP NASYTTLPWQ 960 SNAAHVTNTG RNATADPWAA RTTNSCNTAS ASTVPYANQN AYGDQSTHSA YNAYGSAAAS 1020 SRTVLTGHGL DRNGYSRPVV EYQAMARDSH QRHSRSPDPG AGRDYGGTQG YNQQPLTRWS 1080 AGQGQQSYNP EPSRQWRSAQ QGYTSAEPSR QWSSARQSYT SAEPSRQWSS EPKSYNVESS 1140 RSWNLGQQGQ NPEGSRQWNL GKQDAYNPSD GRRSYEPQSY NVESSRSWNS GQQGQNPEAS 1200 RQWNLGKQDA YNPSDGRRSY DQHWRR*

Sequence ? help Back to Top

Protein Sequence Length: 1227 aa Download sequence Send to blast

MELVPFKPAA GALAEAGFGA GAGSIPAMVA AQQEMLHEQV DQLQRLVVAQ CRLTGVNPLA  60
QEMAAGALSI KIGKRPRDLL NPKAVKCMQS LFALKDTIGK KETREISLLC GVTVTQVREF  120
FTCQKSRVRK FVRLSQEKAL RVEAPKELDN AFSMSTEQIP LDIEAHAEVV EPLRTLEPVV  180
PRSSSQPMDV PQVSSQPMEL SQSCLQPMEA FQNSLQQATA QQYFAAPVMP SGTMVVQPTD  240
AKISPDSVRK EIKQEEVHPG VESEDKKFLE SIFALMRKEE TFSGQVKLME WILQINNVTV  300
LSWFVTMGGL TIMSTWLSLA ANEEQTSVIL VIFKVLLHLP LHKALPAHMS VVLQTINRLR  360
FYRTPDISSK ARNLLSRLSK VLVRSQALKK PQKDLICKQR ISEILRDESW KSEVDITEEV  420
LALTDGANES SKPEPRKTQM LLTASADETN KRSAMQTKSK QKRKVLLVEH PNKKAAVKNV  480
NSARNSTNNS RPLSADDIQK AKMRAMFMQE KYGKVDSSKA SDKSQAMETP KTSGLVNSNV  540
LPVPRDPIRS TAQPFDASTS STAQPVDPST STSKQSTVPQ PDKPEISNGL KLNIGSPKNV  600
VEKLDSKRVP WRIPPAVWID PSWSVSAGDN SKELEVQTQR NRREKETFYA SQKDIPLNPK  660
DPWDLEMDFD DSLTPEIPID QAPDADTMEM DSVGAAPNAA APVKDKQIGS TATSVAVADG  720
ANGEDPEPDL ELLTVLLKNP QLVFALTSNN GEDVSSEQTV ALLDTLKRTG LGLSELVNTL  780
GNGAGAPKEP EPEPIPASLP SPTPSDQTAR AVWGPEHPTQ ARAPNLQQPP LSNRGNTPPI  840
ANTVQQSFSN VMSSLPSQPY ASVSVLPAQI QANVPSLPQL AVSVNPPVQH VSPVNNHLSR  900
ASVHQHAQQY ALASDPVAMS LHQQAAVNKS THGLQSVPNP AVAHSSLPEP NASYTTLPWQ  960
SNAAHVTNTG RNATADPWAA RTTNSCNTAS ASTVPYANQN AYGDQSTHSA YNAYGSAAAS  1020
SRTVLTGHGL DRNGYSRPVV EYQAMARDSH QRHSRSPDPG AGRDYGGTQG YNQQPLTRWS  1080
AGQGQQSYNP EPSRQWRSAQ QGYTSAEPSR QWSSARQSYT SAEPSRQWSS EPKSYNVESS  1140
RSWNLGQQGQ NPEGSRQWNL GKQDAYNPSD GRRSYEPQSY NVESSRSWNS GQQGQNPEAS  1200
RQWNLGKQDA YNPSDGRRSY DQHWRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	763	768	DTLKRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G449000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971183.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	K3XDW2	0.0	K3XDW2_SETIT; Uncharacterized protein
STRING	Si000079m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-125	HB-other family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G449000.1.p