PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G444700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARF | ||||||||
Protein Properties | Length: 810aa MW: 90789.7 Da PI: 6.3662 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F Sevir.5G444700.1.p 129 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 216 99*****************************7555544..58************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ Sevir.5G444700.1.p 217 -RGENGELRVGVRRA 230 .449999*****996 PP | |||||||
2 | Auxin_resp | 112.4 | 4.3e-37 | 255 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF++++++++++lk+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp Wp+S Wr Lk Sevir.5G444700.1.p 255 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESLKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPDSSWRYLK 336 89*********************************************************************.9*******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 120 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-40 | 123 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.88E-21 | 127 | 229 | No hit | No description |
SMART | SM01019 | 1.8E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.928 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-33 | 255 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-13 | 680 | 782 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 4.76E-13 | 691 | 774 | No hit | No description |
PROSITE profile | PS51745 | 24.865 | 697 | 790 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MPPAIMAPPP TPQAPSNSGD PLYPELWRAC AGPLVTVPRP GDLVFYFPQG HIEQVEASMN 60 QVAGNQMRLY DLPSKLLCRV LNVELKAETD TDEVYAQIML MPEPEQNEVA AEKASSGSAA 120 TPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TQSPPTQELV AKDLHGMEWR 180 FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN GELRVGVRRA MRQLSNIPSS 240 VISSQSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESLK NNYSIGMRFR 300 MRFEGEEAPE QRFTGTIVGC ENLDPLWPDS SWRYLKVRWD EPSTIPRPER VSPWKIEPAS 360 SPPVNPLPVS SRVKRPRQNA PQPSPESSVL TKEGASKVDI GSAQTQHQNS VLQGQEQMTL 420 RNNMNESTDS DATVQKPMMW SPSPNGKTHT SFQQRPSMDN WMPLGRRETD FKDNRSAFKD 480 ARTSSQSFGD TQGFFMQTFD DNQHRLSFNN QFQDQGSAHR FADPYFFMPQ QPSLTVESST 540 RTQTANNELR FWSDQNTVYG NTTDQQGFRY GQNPSNWLNQ PFPLVEQPRV VRPHATVAPF 600 DLEKTREGSG FKIFGFKVDT ASASPIQLSS PMSAMREHVV QTQPSASVNE LQPVQTECLP 660 EGSVSTAGTS TENEKSIQQA TQSSKDIQSK SQGASTRSCT KVHKQGVALG RSVDLSKFSD 720 YDELKAELDK MFEFEGELVS ANKNWQIVYT DNEGDMMLVG DDPWEEFCSI VRKIYIYTKE 780 EVQKMNSKSS APRKEEPPAA GEVCAATNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-167 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-167 | 20 | 361 | 17 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G444700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067605 | 0.0 | BT067605.1 Zea mays full-length cDNA clone ZM_BFc0099C24 mRNA, complete cds. | |||
GenBank | KJ726815 | 0.0 | KJ726815.1 Zea mays clone pUT3354 ARF transcription factor (ARF25) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971147.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | K3XEM3 | 0.0 | K3XEM3_SETIT; Auxin response factor | ||||
STRING | Si000340m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G444700.1.p |
Publications ? help Back to Top | |||
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