PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G441400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 254aa    MW: 26802.9 Da    PI: 8.0265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G441400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.91.7e-35231531128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeekewyfFskrdkky.atgkrknratksgyWkatgk 88 
                         lp GfrF+Ptdeel+ +yL++k+ + +l++  +i+++d+ +++PwdL p ++    + e +fF+  +++  ++g  + ra+ +g W+ +gk
  Sevir.5G441400.2.p  23 LPIGFRFRPTDEELLLHYLRRKALACPLPA-GIIPDADLARLHPWDLlPpAAGGDADGERFFFHLPATRCwRKGGGAARAAGTGLWRPSGK 112
                         699***************************.99**************6434433344578888776665516799**************** PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +k v+s   ++ vg+k+tLvfy+gr + + +tdW mheyrl
  Sevir.5G441400.2.p 113 EKLVVSPrCKRPVGTKRTLVFYRGRGRAAARTDWAMHEYRL 153
                         *****9877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-4619191IPR003441NAC domain
PROSITE profilePS5100544.78523192IPR003441NAC domain
PfamPF023654.3E-2124153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEGRPAGAWR VQGPAGAPVA AGLPIGFRFR PTDEELLLHY LRRKALACPL PAGIIPDADL  60
ARLHPWDLLP PAAGGDADGE RFFFHLPATR CWRKGGGAAR AAGTGLWRPS GKEKLVVSPR  120
CKRPVGTKRT LVFYRGRGRA AARTDWAMHE YRLLPSGLHP FHGCAAAGNA PTAHVSCHGA  180
AADWVVCRIF KRTKPAAHRG QEDDDAEEPS SPSSASSCVT DTSEAGDQEQ DGDDEESSSS  240
SSNGGSSCSV ASN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-282319617169NO APICAL MERISTEM PROTEIN
1ut4_B8e-282319617169NO APICAL MERISTEM PROTEIN
1ut7_A8e-282319617169NO APICAL MERISTEM PROTEIN
1ut7_B8e-282319617169NO APICAL MERISTEM PROTEIN
4dul_A8e-282319617169NAC domain-containing protein 19
4dul_B8e-282319617169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G441400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699701e-117EU969970.1 Zea mays clone 337945 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971125.10.0NAC domain-containing protein 83-like isoform X2
TrEMBLA0A368RFJ70.0A0A368RFJ7_SETIT; Uncharacterized protein
STRINGPavir.Eb03721.1.p1e-135(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-32NAC domain containing protein 94